Consensus terms for the NEUZ domain

Y15160.1a        ATPLLFHPHTKGSQILMDLSHKAVKR--QAS-FCNAITFSNRPVLIYEQVRLKITKKQCC
CONSENSUS/80%    t..l.FH..hpGsplhl..stphApR....s.aspulsFotRPlt.tE.h.lplpch.ph
CONSENSUS/65%    cssLpFH.ph+GsplplspstpsApR..ptupFspulsFosRPlc.sEhhhlclp+htst
CONSENSUS/50%    csPLpFH.sp+GuplplssspplAcR..ppucFscAlVFSsRPlRlsEplpV+ls+hsss


Y15160.1a        WSGALRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFA-NEGNIIAFWVDKK
CONSENSUS/80%    asGslphGhTspsPt.lp.sshs.....shh.h.th.hht.s.t...pp.s..sh.h.tt
CONSENSUS/65%    WsGulchGlTspsPshlc.sshsp.sssshhshsshhshtts.thh.ppsshlshhl.sp
CONSENSUS/50%    WuGuLclGVTosDPusl+sssLPptusssLlspsGaWstspscpht.cpssIluhhVssc


Y15160.1a        GRVFYRIN
CONSENSUS/80%    uchhh.hp
CONSENSUS/65%    G-lhhths
CONSENSUS/50%    G-lhhslN

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T