Consensus terms for the NTR domain 

TIM1_RAT         CSCAPTHPQTAFCNSDLVIRAKFMGSPEIIET-------TLYQRYEIK-MTKMLKGFDAV
CONSENSUS/80%    CoCsPsHPQpAFCNuDlVIRAKhVup..lpps.......hhh.pYpIK..hKMa+G.pt.
CONSENSUS/65%    CoCuPsHPQsAFCNSDlVIRAKhVGptEVsps.......hhh.pYEIK..hKMaKGFsth
CONSENSUS/50%    CTCuPsHPQsAFCNSDlVIRAKhVGcKEVccG......PhtphRYEIK.QhKMFKGFcph


TIM1_RAT         GNATGFRFAYTPAMESLCGYVHKSQNRSEEFLIAGRLR-NGNLHITACSFLVPWHNLSPA
CONSENSUS/80%    .....lpalYT.s.pulCGh.hcst..p.paLlsGph..sGphahshCsFl..WspLo.s
CONSENSUS/65%    ....clcaIYTss.ESlCGhthcsps.pcEaLIsG+l..sG+hHIohCsFlsPWcoLS.u
CONSENSUS/50%    s...cIcFIYTsAuESVCGlpL-sss.KcEYLIAG+lp.-GKhHITLCsFVsPWDoLSso


TIM1_RAT         QQKAFV-KTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSEKGYQSDHFACLPRN
CONSENSUS/80%    Q++uhs.ppYthGCt.Cplh.C..lPChlpS.scCLWhD.l.phs..GaQu+ahACl.pp
CONSENSUS/65%    Q++uhs.+pYphGCp.CplhsC..IPChlpSsscCLWTD.lhptu.pGaQu+HaACl.Rp
CONSENSUS/50%    QRKGLN.+RYphGC-.CKIpsCssIPCaloScsECLWTDhlhstShsGaQSKHaACI+Rs


TIM1_RAT         PDLCTW
CONSENSUS/80%    sG.CsW
CONSENSUS/65%    sGhCoW
CONSENSUS/50%    sGhCoW

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T