I51285/1-86 NPLHD-YKKTGELMLI---KVNKTLEV---KTKLLNTTEQCAKRCSRNKGL-----SFTC CONSENSUS/80% ....t.a.hh.th.h.....................s.ppChthC.p.........t..C CONSENSUS/65% pttss.ahthtphpl.......hsth......ht.hshppChptChp.........phsC CONSENSUS/50% sssss.FhphsstpLs.....spspt.....htsssohc-CtppChp.........stsC I51285/1-86 KAFAYDR------------VTKRCHWLS-FNSLTNGVR------KKQDHAFDLFEKK CONSENSUS/80% puh.a..... ......tttC.h.t...t...t...........t.t..hh.p. CONSENSUS/65% puhsatt... ......sptChlhs...pphhshp.......htstshshapph CONSENSUS/50% cuasYss... ......spsChlas..tsshsssp.......tsspstshac+t
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |