6239.F20D12.1a_from_378_to_521MLQYAFPRDFPPN-RIVNPNMKLQRAVKL--------LLKDLKCNPYY--DDK----QIW CONSENSUS/80% p.shphh.t.......tt..tthtpthtp.........hhG.hlhshY...ps....ppa CONSENSUS/65% posh-hhpph.....tpt.tpphpcphpc........pllGhlVhopY...NN....+sY CONSENSUS/50% -TVhDhhpplh...ppss.spsap-psp+........pLlGslVlT+Y...NN....+TY 6239.F20D12.1a_from_378_to_521ATNTITVSDVDYN-----------APKDPE------------------FRQKYPN----- CONSENSUS/80% t.....lsslthp...........sspspF.htp.t.......ohhpYatppYs...... CONSENSUS/65% +.....ls-lsash..........sPpssFpppsGpp......oah-YYpppYs...... CONSENSUS/50% R.....IDDIsacp..........sPpsoFpps-Gscl.....TFs-YY+cpYs...... 6239.F20D12.1a_from_378_to_521------------LKFPMLP-------------AVQCGTGP-------------------- CONSENSUS/80% .......hplp..ppshl.hst.............t........................ CONSENSUS/65% .......lplpc.pQPlL.lscspt.......t..sst...................... CONSENSUS/50% .......IcI+DhsQPLL.lS+s+p+......ctpssps..................... 6239.F20D12.1a_from_378_to_521-----------HKRLMPLEYLKVL-PYQSIDRRVLEEF----ELTPRANAPNE CONSENSUS/80% ...........t..hl.PELshhp....shspphhpsh.hhttht..hph.s. CONSENSUS/65% ...........p.hhLlPELshlT....Glsschppcaphhcslupps+hssp CONSENSUS/50% ...........phlhLlPELCalT....GLo-cMRpDFplM+-lus+T+lsPp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |