O30008/1-226 YLTVGS--DIAYPPFEFTDEK--TGEYAGFDIDLMKEIAKRMG-------LEAKFVNT-- CONSENSUS/80% .lhluh....t..shthhpt........Ght.chhp.lsptht.......hphphh.h.. CONSENSUS/65% plplus..pss.sPhshtctp...sph.Ga-s-lhptlucchs.......hplphh.h.. CONSENSUS/50% slpVGs..psshsPFuhp-sp...uchsGa-lDlsctlAcclu.......lclcapph.. O30008/1-226 -AWDGIIPGLLAHKYDVICSAMTI-------TEERAKQ-----VDFSDPYFEAK------ CONSENSUS/80% .thtthh.tLtstphDhhhst.s........s.t+tp......h.hs.shh.st...... CONSENSUS/65% .shsthhssLpsschDhlhsshs........s.cRtpt.....htaopsYhhss...... CONSENSUS/50% .shssllsuLpsGclDllsushoh.......Ts-Rpcp.....lsFosPYhpsu...... O30008/1-226 QVIITRADET-------------------DIQDVEDL-------NGKVVAVQQ------G CONSENSUS/80% .hhlh.pst......................pshtsl.......tstplsh........s CONSENSUS/65% hshlsppsss....................lpohp-L.......pG+plsl.t......G CONSENSUS/50% tslls+csss....................IcolcDL.......cGKcluVss......G O30008/1-226 TTGDFAAQRL------------------KDEKGIQLEIKRFEGT---------PEALMAV CONSENSUS/80% ss...hh.p.........................thphh.htp...........thh.tl CONSENSUS/65% osttthhpch........................psplhphpsh.........spshttl CONSENSUS/50% osspphlpch......................h.pspllsacst.........spslpsl O30008/1-226 QKGDADAAIIDNF-VAYIAAKENP---GLYRIVESDEFA----------PEYYGIAVNKD CONSENSUS/80% ttuphDshh..t...h..hhtp.......hthh...................hshshtps CONSENSUS/65% tpGcsDuhhsst..hhtthhppp.....phphs.t.hpp...........tthuhshpcs CONSENSUS/50% psG+sDAslsDss.hlsshs+ppt...schcllssshss...........pshuhul++s O30008/1-226 NP-----ALLEKINEVLKEIKEDGTYDK-----------IYNKWF-GE CONSENSUS/80% p......thht.hsthltth.tpt...............h.pchht.. CONSENSUS/65% st.....plhphlspslpphppss.hp............l.p+ahstt CONSENSUS/50% ss.....cLtctlNpuLpclcscGphpp...........lhcKWhspc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |