AF017106_1/1-8 IHVTILHKEEG------------AGLGFSLAGGADLEN---------------------K CONSENSUS/80% ....h.h.p...... .......hGhtl.t............................ CONSENSUS/65% t.hhlplt+t..... .....tshGhpltstt.........................t CONSENSUS/50% phpplplp+ss.... .....ssLGlslsuspst.......................p AF017106_1/1-8 VITVHKVFPN--------GLASQEGT-------------------IQKGNEVLSING--- CONSENSUS/80% .hhlttl..s........usAttss....................lp.GD.lhtlss... CONSENSUS/65% slhlpplh.s........usAtpsG....................lp.GDhIlplNG... CONSENSUS/50% ulhlsslhsG........usAscsG....................LcsGDpIlpVNG... AF017106_1/1-8 ----KSLK---GTTHNDALAILRQAREP----RQAVIVTRK- CONSENSUS/80% ......h....tht..thh.hhtt.........ltlhl.p.. CONSENSUS/65% ....hslp...shsptpshthlpps.......plplhlhctt CONSENSUS/50% ....pslp...shscpcslphl+sst......plsLplpRss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |