Q9VSV9/331-468 PINRVVISHTAAEG--CESRDSCSYWTRVTQSRHMDTFNW--SQVGYNFLVGG------- CONSENSUS/80% ....hllhHpss.s.........tt.hp.h.p........ ..h.hphhls........ CONSENSUS/65% .ssthlllHssuss........stt.hp.hps.ph..... .ssuhpahlst....... CONSENSUS/50% ssspslllHsousss......ssssplcslpsschp.... .cluhHalVut....... Q9VSV9/331-468 -------DGRIYEGRG-----WNYMGDHT-------RDNNNNSIGITFLGTFRR------ CONSENSUS/80% .......tstlhphhs.....Wthts.t...........s.hslGlph.t.......... CONSENSUS/65% .......sGplhphhs.....Wpssssph.........hNphSlGIphhstht....... CONSENSUS/50% .......-Gclapsss.p.huWHAGsuph........tsNspSIGIElhGstp....... Q9VSV9/331-468 -QEPTPKSLEAYLDNIGGGLILRFVE------------------RQQWLAQPPQKEIPD- CONSENSUS/80% .....tts..th...htt.hhhthh........................thhsHp.h... CONSENSUS/65% .ttshspshtsshthlsp.hhpthh.....................sphplhuHpplss. CONSENSUS/50% .sssascAhpsupshLsp.llpsthh...................hsstclhGH+plss. Q9VSV9/331-468 -------LELP CONSENSUS/80% .......t.ps CONSENSUS/65% .......ppss CONSENSUS/50% .......spcP
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |