CHD4_HUMAN/1-44 FCR--VCKD----------------------------------GGELLCCD--TCP-SSY CONSENSUS/80% hC...hCtt...................................t.hl.Cp..tCt.t.h CONSENSUS/65% hC...hCtp..................................ssthltCs..tCp.pha CONSENSUS/50% hCt..lCscs................................sssphlpC-..sCs.psa CHD4_HUMAN/1-44 HI-HCLNPPLP-----------------------------------------------EI CONSENSUS/80% H...Cht..................................................... CONSENSUS/65% Hh.tCht.sht................................................. CONSENSUS/50% Hh.sClshstp...............................................th CHD4_HUMAN/1-44 PNGEWLCPRCT CONSENSUS/80% ...tahC..C. CONSENSUS/65% .ptpahC.pCp CONSENSUS/50% ssspWhCspCp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |