DPOL_RHCM6/1-4 PVYRCLSFDIECMSA---------------SGGFPAAEQT------------DDIVIQIS CONSENSUS/80% ..hhhhshDlcsh.......... .........................t.hh.hs CONSENSUS/65% sthphhsaDlEshst........ .....hs.st..............ts.lltlu CONSENSUS/50% sshclluFDIEohss........ ..ptthPpsp..............pcsllpIu DPOL_RHCM6/1-4 CVCYNTGGTGCEE-------------------NTVFGTSGLHLFTIG--SCAPLAG---- CONSENSUS/80% .hh.t..t...................................h... .....t..... CONSENSUS/65% hhh.pttp..................................hh.h. .ht.hpt.... CONSENSUS/50% hhhpsssp............................thtpphhhshs sssplcs.... DPOL_RHCM6/1-4 --------------VDVYEFP------------SEYEMLLGFLIFFQRYSP------CFV CONSENSUS/80% ..... ..........h..ht............pphthh.thhthh.tht........hh CONSENSUS/65% ..... ..........lh.hs............s-hphlhtahphlpphss......phl CONSENSUS/50% ..... ........splhpas............sEp-lLpsahphlpchcP......-ll DPOL_RHCM6/1-4 TGYNINS-----FDFKYILTRLEF---VYKLSPG----------PYSKLPAQ--GRFSMY CONSENSUS/80% hsaNh.t.....ash.hlhtph.....hh................h.p.t.......... CONSENSUS/65% hsaNhss.....FDhsalhp+hpp...hth.th............hs+hptt...th.hh CONSENSUS/50% hGaNlss.....FDhsallsRspp...lthhphs..........tlu+hsss...phshp DPOL_RHCM6/1-4 SPLKKFV----------------------------------------------------- CONSENSUS/80% ....t.t..................................................... CONSENSUS/65% t.h.thphht.................................................. CONSENSUS/50% pspspsptts.................................................. DPOL_RHCM6/1-4 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ DPOL_RHCM6/1-4 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ DPOL_RHCM6/1-4 ------------------------TTTTTKVFISGTVVIDMYPVCMAKTS---SPNYKLN CONSENSUS/80% . .............................hh.hchh.hhtt.ht...h.thplp CONSENSUS/65% . ..........................h.thhhhDhhthhppphp...hpsapLs CONSENSUS/50% . ....................t..phhhsshlplDhhslhcpchp...hssYsLs DPOL_RHCM6/1-4 T---------MAELYLK----------------QQKEDMSYK---DIPVKFIS------- CONSENSUS/80% ..........h.t.hht....... .........tt.ph..t....h.t.h......... CONSENSUS/65% s.........lsphhlt....... ........ppc.clshp...ph.phapt....... CONSENSUS/50% s.........lucthLs....... ........ppKp-lshc...clschass....... DPOL_RHCM6/1-4 ----GCEGRAQVGKYCVQDAVLVKDLFNTIN---------FHYEAGAI-ARLARIPMRRV CONSENSUS/80% ......t.h..hh.hshtsshhshplh.hh..........hh..h.th.sth.th.h..h CONSENSUS/65% ......pthtthhpYshpDshlshplhpph..........hh..hhth.sphhthshtph CONSENSUS/50% ......cptppltcYslpDuhLshcLhp+ht.........hhsphspl.uplsslshpcs DPOL_RHCM6/1-4 IFDGQQIRIYTSL-------LDECACRDFIMPNHKGADNS-------------------- CONSENSUS/80% h..ttt.hh...h.......h..hht.shhhs............................ CONSENSUS/65% hhtspphhl.shl.......hptthppshlhPsttt........................ CONSENSUS/50% lpsGpptclpshL.......lcpspcpshllPsppspt...................... DPOL_RHCM6/1-4 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ DPOL_RHCM6/1-4 ---------------------------------------------------------SEP CONSENSUS/80% ............................................................ CONSENSUS/65% ...........................................................t CONSENSUS/50% ..........................................................tp DPOL_RHCM6/1-4 TDVSYQGA-TVFEPEVG-YYSDP--------------VVVFDFASLYPS----------- CONSENSUS/80% t..th.ts.hlhps..t.hht................hhhhDhtshaPs........... CONSENSUS/65% pthtapGu.hVhcPhtu.haps...............lhshDasSLYPo........... CONSENSUS/50% pptsYpGu.tVl-PpsG.hacss..............lhslDFsSLYPS........... DPOL_RHCM6/1-4 ---------IIMAHNLCYSTFVAP------------------------------------ CONSENSUS/80% .........hh.thsls.ssh.h..................................... CONSENSUS/65% .........lhhshNlsasshhhtt................................... CONSENSUS/50% .........IIhsaNLCaoTlstps................................... DPOL_RHCM6/1-4 ----------------------------------------------------GGESPPE- CONSENSUS/80% .......... ................................................. CONSENSUS/65% .......... .........................................t....... CONSENSUS/50% .......... .........................................pt.hhh.. DPOL_RHCM6/1-4 -SDVLTV-ELESGLSYRFVKNTVR----------------NSVLSELLTKWVSQRRAVRE CONSENSUS/80% .............t...hht.p.t.................shhsthltthht.+hth+t CONSENSUS/65% ...........ssp.hhhhppphp.................ullsphlpphlptRhph+p CONSENSUS/50% .tthhph.phsssp.hthlcpssc................tulLsplLpchlspRpplKp DPOL_RHCM6/1-4 TMRSCH-------------------------------------------------DPVK- CONSENSUS/80% .h.t.t...................................................... CONSENSUS/65% thtppp.................................................p..p. CONSENSUS/50% phcssp.................................................sstc. DPOL_RHCM6/1-4 -RMLLDKEQLALKVTCNAF--------------------YGFTGVVNG--MMP----CLP CONSENSUS/80% ...hhs..p.sh+hhhssh....................ashhsh......h.....t.. CONSENSUS/65% .phhh-tpQhulKlhsNuh....................YGhhuhtts..hh.....sh. CONSENSUS/50% .ctlhDppQtAlKlhsNSs....................YGhhGsspu..phs....shs DPOL_RHCM6/1-4 IA----ASITRIGR----------------DMLMRTSQFVEENFAEPCFLHNFFNREDYS CONSENSUS/80% hs....t.hs.hup................thl..shthhpt.................. CONSENSUS/65% lu....ttlTthGR................phlppshphlcphh................ CONSENSUS/50% lA....sslTshGR................phLppopchlcsts................ DPOL_RHCM6/1-4 GDP--------------------------------------------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ DPOL_RHCM6/1-4 ---VAVKVIYGDTDSVFVCYRG CONSENSUS/80% .....hphlYuDTDSlhhth.h CONSENSUS/65% .....hcllYGDTDSlhlphth CONSENSUS/50% ....th+VlYGDTDSlalptss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |