TDT_BOVIN/1-35 NYN-HIFTDAFEILAENSE--FKENEVSY------VTFMRAASVLKSLPFTIISMKDTE- CONSENSUS/80% .hp.phhhphhp.lsp..c..htEs.h.h.......hh.pu.uhlcphsh.ltshpphp. CONSENSUS/65% shN.chhhcshchLApphE..hsEs.tpt......shahpAtSllcshshslpuhc-hc. CONSENSUS/50% spN.+tFTDAh-lLAcshE..hsENccss......ssFh+AuSVLKsLPasIsShc-lc. TDT_BOVIN/1-35 GI----------PCLGDKVKCIIEEIIEDGESSEVKAVLNDER--YQSFKLFTSVFGVG- CONSENSUS/80% th..........sshGtphhthhp-hlppGp.....th.pcph...pthp.hhplhGlG. CONSENSUS/65% sL..........PslGcpltphIcEIlpsGc..chpchhsD-p..hculp.FssVaGlG. CONSENSUS/50% uL..........PslG-+l+clIEEIl-sGcS.cscclhNDE+..Y+olKhFTsVFGVG. TDT_BOVIN/1-35 LKTSEKWFR-MGFRSLSK-IMSDKT--LKFTKMQ-KAG------FLYYEDLVSCVTRAE- CONSENSUS/80% .pputchhp.hGh+olpp.lhppt....phsc.p.hhG......h.aapDh.ptlsptE. CONSENSUS/65% s+sAcKaac.hGh+Tlcc.l+pccp...plo+hQ.+sG......hpYY-Dlhptls+sE. CONSENSUS/50% sKTAcKWaR.hGlRTLE-.lKs-cs..hpLo+hQ.+sG......lpYYEDlscsVo+uE. TDT_BOVIN/1-35 AEAVGVLVKEAVWAFLPDAFV--------TMTGGFRRGKKIGHDVDFLITSPGSAEDEE- CONSENSUS/80% h..ht..h.phh.th..ph.h....... th.GuapRut.hstDlDhll..s..t..pp. CONSENSUS/65% hptht.llpptshthhs-hhl....... slsGuaRRG+phutDlDhLlopst.tpppp. CONSENSUS/50% scslsplVccslpshtPDull....... oloGGFRRGKchG+DVDhLITsPtpsc-cc. TDT_BOVIN/1-35 QLLPKVINLWEKKGLLLYYDL-----VESTFEKFKLPSRQVDTLDHFQ------------ CONSENSUS/80% .....hhphh.................tphh.p..h.php.thhspht............ CONSENSUS/65% .....hhshh................lcphhcchphsshphsslsphp............ CONSENSUS/50% .hl..llslh....hhlahph.....l-ssa-chplPSp+sssLc+ap............ TDT_BOVIN/1-35 KCFLILKLHHQRVDS------SKSNQQEGKTWKA---------------------IRVDL CONSENSUS/80% hthhhlh....p.p.........................................hplDh CONSENSUS/65% psahhlth..pp.-ptp.....t................................hRlDl CONSENSUS/50% KsFhIL+lt.pct-cpp..h.pppp.tt.c..ct.....................hRVDl TDT_BOVIN/1-35 VMCPYENRAFALLGWTGSRQFERDIRRYATHE-RKMMLDNHALYDKTKR----------- CONSENSUS/80% hhhs.cphshulltaTGSc.aththR.hA.pc.hph...sh.hhshtp............ CONSENSUS/65% hhssh-phshulLsaTGS+pFpRclRphAppc.hch..sshthhspspp........... CONSENSUS/50% llsPh-pYuaALLGWTGS+pFsRDLRpaAsc+.c+lplDsHtlYD+ocp........... TDT_BOVIN/1-35 -----------------VFLKAESEEEIFAHLGLDYIEPWERN CONSENSUS/80% ...................h.htsEc-lFthluh.YhpP.pRs CONSENSUS/65% .................hhlpspoEc-IFsaLGLcYl-P.cRN CONSENSUS/50% .................hhLcscSEc-IFcaLGL-YlEPp-RN
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |