rnmkpx_1 FPVQILPY-LYLGCAKDST--NLDVLGKYGIKYILNVTPNLPNAFEHG------------ CONSENSUS/80% t..plhst.lalus..t........hpthshphhlsht...................... CONSENSUS/65% t.pplhst.laLuuhtst.....s.hpthslshllssst..................... CONSENSUS/50% ssscIhsp.LYLGutssst..phshhsphsIsallNlspphs.................. rnmkpx_1 ----------------------------------------GEFTYKQIP-ISD------- CONSENSUS/80% ..........................................h.hhtls.hps....... CONSENSUS/65% .........................................thphhplP.hpD....... CONSENSUS/50% ........................................sphphhplP.lcD....... rnmkpx_1 ---HWSQNLSQFFPEAISFIDEA-----------------RSKKCGVLVHCLAGISRSVT CONSENSUS/80% .....tttl...h..shphlpph..................tptttlllHC.sGloRSus CONSENSUS/65% ...ptpspl.thhstshpaIcps.................pppstplLVHChsGlSRSuo CONSENSUS/50% ...spssslssalspsscFI-su.................cspGu+VLVHCtAGlSRSAT rnmkpx_1 VTVAYLMQKMNLSLNDAYDFV------KRKK--SNISPNFNFMGQLLDFERT CONSENSUS/80% lhhuYlhph.thshppuhthl......ptt+....h..s.sahtpLhtatph CONSENSUS/65% lshAYlMphhshshp-Ahphl......+ppR..stlpPNhsFhtQLhpapph CONSENSUS/50% lllAYLMcppshsls-AaphV......+p+R..ssIsPNhuFhpQLh-aEpp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |