MMSAPR_1 QTDLKRKVFVFPRESETDHVKLIPHLEKPLQNFTLCFRTYSDLS--RSQSLFSYSVKG-- CONSENSUS/80% .tshstpshhhPhpotp.asplhs.h...LpsFTlChhhhsphs..t.hohFSYss.t.. CONSENSUS/65% ps-hstKsFlFPpcSsssaVpLhstlppsLpsFTlChhhhosho..RsholFSYuTpt.. CONSENSUS/50% psDhopKsFVFP+EScosYVpLcspLcKPLpuFTlCh+hYo-LS..RstSLFSYATps.. MMSAPR_1 RDNELLIYKEKVGEYSLYIGQS---KVTVRGMEEYLSPVHLCTTWESSSGIVEFWVNGKP CONSENSUS/80% psNElllhhtt.t.hthhlsst....h.h.h....st.hHhChoWpStsGlhphalsGp. CONSENSUS/65% psNElLlahpc.staplhlssp...cshhps.pp.sp.hHlCsoW-SpoGlsEhWlsGc. CONSENSUS/50% p-NELLlacp+susYulhIGGs...clphcssEphssPsHICsSWESuoGIsEhWVDGKP MMSAPR_1 W--VKKSLQREYTVKAPPSIVLRQEQD--NYGGGFQRSQSFVGEFSDLYMWDYVLTPQDI CONSENSUS/80% h..stcslt.ta.ltsts.llLGQEQD..shGGtF-tsQuhVG-luph.hWD.VLssppI CONSENSUS/65% h..s++sLppGasVtstssIlLGQEQD..oaGGsFDtoQSFVG-luclNhWD.VLoP-cI CONSENSUS/50% h..V+KuLp+GYoVsssuSIILGQEQD..SaGGGFDsoQSFVGEIuDlNMWDpVLoPEEI MMSAPR_1 LFVYRDSPVN-----PNILNWQALNYEINGYVVIRPRVWD- CONSENSUS/80% ..lh.st........sNllsWtshphph.G.shhhs..hs. CONSENSUS/65% pslhtsssh......sNlLsWpsLpachpGtshhpPp.hs. CONSENSUS/50% pslapGush.....ssNILsWcALsYElpGtVhl+PphWs.
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |