7739.JGI88829_from_23_to_105YKKLLLGIFEDMDNAEY--KTFKHHLDCVVS--------RDNVSIPKYRVQRA--KRQDM CONSENSUS/80% .p.hlh.hLpplpp.ch..ppFK.hL.p................lshtthpth..s..pl CONSENSUS/65% hc.tLhthL-pLscp-h..ppFK.hLtpt...........t..plshsplcps..sthcl CONSENSUS/50% scpsLLpsLEcLsccEh..++FKphLpspst.........shppIPpucl-pA..cpl-L 7739.JGI88829_from_23_to_105PDLILR-YIQRREALDVVARILRDL-PNVQLLER--IRQ CONSENSUS/80% sphhhp.ha.tt.uhphshplhpph.p.tplspp..hpp CONSENSUS/65% ssllhp.pastptuhphslplhcch.shpcLscp..lpp CONSENSUS/50% A-LLlp.pYssctAhclslcllccl.spp-Lu-c..Lcc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |