4155659/1-152 VELGIDEVM-----PNPYQPRKIF----SEDSLEELAQSIKE------------------ CONSENSUS/80% ..l.hp.l..........p.t.........tthttlhtsltt.................. CONSENSUS/65% hplslpplp......sttpspp........pplpcLhpoIpp.................. CONSENSUS/50% tclcl-plp.....sssppsRps.....pt-plc-LscSI+p.................. 4155659/1-152 HGLL-QPVLVVSE-------NGRYHLIAGERRLRASKLAK------MPTIKAIVVDIE-- CONSENSUS/80% .G.h..Plll.............h.llsGt+Rhtuh..hs........pl.shlhpht.. CONSENSUS/65% tGhh.pPllVcth.........hapllsGp+RhcAsphhG......hpplsshlhphs.. CONSENSUS/50% pGll.pPllV+pss.......spYcIlsGcRRh+AupttG......hsclPsllpchs.. 4155659/1-152 ------QEKMREVALIENI CONSENSUS/80% .......t..h.hth.ps. CONSENSUS/65% ......tppththsl.cNh CONSENSUS/50% ......cppshphultENl
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |