gi|505110|dbj|B ILDITYGKEDVPLSCV-NEIDTTPP-----------PQVAYSKERIPGKGVF---INTGP CONSENSUS/80% .hDhstspEshsl.hh.Npls.p.... .........atYhtp.h.sts.......... CONSENSUS/65% .hDlopGpEshPlshV.NplDt-t... ........pFpYhschhhsps.......pts CONSENSUS/50% ptDlopGcEslPlslV.N-lDs-ss.. .......ssFcYlscplhsssh.....spss gi|505110|dbj|B EFLVGCD--CKD---GCRDKS--KCACHQLTIQATACTPGGQINPNSG------------ CONSENSUS/80% ....sCp..C.t...sCt.s....CtC.ths...tths...................... CONSENSUS/65% tsh.uCs..Cst...sCsssp...CtChtts..ssphsh..................... CONSENSUS/50% ssssGCs..Css...sCosup...CsCspcs..uschsY..................... gi|505110|dbj|B --------------------YQYKRLEECLPTGVYECNKRCK CONSENSUS/80% .......................tth.ht.hshlaECs.hCt CONSENSUS/65% .......................tthhhphtsslaECsshCs CONSENSUS/50% .....................ppsshplcttslIYECNspCs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |