388919.SSA_2154_from_24_to_164PINPKTKVAIVTCMDSRL--HVAQALG-LALGDAHILRN--------------------- CONSENSUS/80% tttppPthhhlsC.DSRls.p.hhs....t.G-hFlhRshut.................. CONSENSUS/65% spsQpPphlhluCuDSRlssphlhs...htsG-lFVhRNsuNhls............... CONSENSUS/50% upuQsPcsllIuCSDSRVsssllhs...tsPG-lFVlRNlGNlVsstt............ 388919.SSA_2154_from_24_to_164------------AGGRVTEDMIRSLVISQQQLGTRE-----------IVVLHHTDCGAQT CONSENSUS/80% ......................uslpaulthLtst............lhlhGH.tCGuht CONSENSUS/65% ....................h.uulpaAlphLtlcp...........llVhGHpsCGulp CONSENSUS/50% ...................sshuulEYAVpsLsVcc...........IlVlGHosCGulp 388919.SSA_2154_from_24_to_164FK-NE-----------------------EFTAYLHKELGVDVS----------------- CONSENSUS/80% h.ht.........................htthlp.h...h................... CONSENSUS/65% ushp........................hlpphlphhtsshpth.t.............. CONSENSUS/50% Ashst.p.....................hlssWlcplpsstppsttt............. 388919.SSA_2154_from_24_to_164-----------------------DQDFLPFTDVEESVREDMA-----------------L CONSENSUS/80% ........................h...sh..thtplhp..................... CONSENSUS/65% ......................pthtphslhtplpsltpts................... CONSENSUS/50% ......................pphsctNVtpplcsLpsss..................h 388919.SSA_2154_from_24_to_164LRQSPLIP-------------------ADVKISGAVYDVDTGRMTVVE CONSENSUS/80% ltpt..ts....................pltlhGhhasltsG.l..h. CONSENSUS/65% lppthtps....................pltltGhhYslpsGtlp.hs CONSENSUS/50% lccshppG....................cLslHGhhY-lcoGclpsls
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |