rras_mouse -ETHKLVVVGGGGVGKSALTIQFIQS----YFVSDYDPTIEDSYTKICTVDGIP-ARLDI CONSENSUS/80% ..paKlVllGsGGVGKSulTlQhlpt hFlppYDPTIEDoYpKph.lDsp..shL-I CONSENSUS/65% .ppYKlVllGuGGVGKSALTlQFlQs pFl-cYDPTIEDSYRKpsplDscs.shLDI CONSENSUS/50% .c-YKLVVlGuGGVGKSALTIQFlQu pFV--YDPTIEDSYRKQlsIDscs.shLDI rras_mouse LDTAGQEEFGAMREQYMRAGNGFLLVFAIND-RQSFNEVGKLFTQILRVKDR-------- CONSENSUS/80% LDTAGpcpaoAMR-.Yh+sGpGFllVaulss ppSFpcltthppplhRV+cp........ CONSENSUS/65% LDTAGQEEaoAMR-pYhRsGpGFllVYSlTs +pSFc-lpph+pQIlRVKDp........ CONSENSUS/50% LDTAGQEEFSAMR-QYMRoGcGFLLVYSITs RpSF-Elpsa+-QILRVKDp........ rras_mouse -----------DDFPIVLVGNKADLENQ-RQVLR-SEASSFSASHH-------------- CONSENSUS/80% ...........pphPhllVGNKsDLpp..R.Vst.p-uppLAppht.............. CONSENSUS/65% ...........-phPhlLVGNKsDLcpp.RpVop.pEGppLApphs.............. CONSENSUS/50% ...........-clPlVLVGNKsDLEsc.RpVSs.cEGccLAcpas.............. rras_mouse -----------------MTYFEASAKLRLNVDEAFEQLVRAVRKY CONSENSUS/80% .................s.ahEsSAK.p.slpcsFhpll+tlpt. CONSENSUS/65% .................ssFhEoSAKt+hNV--sFapLVRpl++. CONSENSUS/50% .................ssFlETSAKpRhNV--AFacLVRcIR+p
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |