rho2_yeast LVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDSRV------------------- CONSENSUS/80% hVlVGDGusGKTslLhsaspstFPptYlPTVF-Nasssh.h................... CONSENSUS/65% hVlVGDGulGKTsLLlsaopstFPppYlPTVF-NYssslhh................... CONSENSUS/50% lVVVGDGAVGKTCLLIsYTsssFPc-YVPTVFENYsuslpl................... rho2_yeast -----------DGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINART CONSENSUS/80% ...........ssp.lpLsLWDTAGQE-Y-pLRPLSYspsslhLlCFulss.sShpNltp CONSENSUS/65% ...........-sc.lpLuLWDTAGQE-YDRLRPLSYPpoDVhLlCFSlss.sSh-Nlpp CONSENSUS/50% ...........Du+slpLuLWDTAGQEDYDRLRPLSYPsoDVFLlCFSVsoPsSF-NVpc rho2_yeast KWADEALRYCPDAPIVLVGLKKDLR-----QEAHFKENAT-DEMVPIEDAKQ-------- CONSENSUS/80% KWhsElpcasstsshlLVGs+hDhR .......t.htphpt.t...hp............ CONSENSUS/65% KWhPElp+asPssPhlLVGsKhDLR ....tc.pslpplpppp.pPlo.ppu.t...... CONSENSUS/50% KWhPEVpHaCPssPllLVGTKtDLR ....sDpsslccLpcpcppPlTsppGpt...... rho2_yeast ---------------VARAIGAKKYMECSALTGEG-VDDVFEVATRTSLLM CONSENSUS/80% ............hsppltAhtYhECSAhppps.lpplFptAhhhsh.. CONSENSUS/65% ............hA+cItAhpYlECSAhTpps.lcpVFctAlcsslp. CONSENSUS/50% ............lAKcIGAhpYlECSALTpcG.l+pVF-cAl+usLps
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |