YQHL_BACSU/1-96 KTLTEEEFRA--------GYRKAQLIDVRE-----------------------------P CONSENSUS/80% .....h..............tthhllDsR............................... CONSENSUS/65% htht.ht.h.........tttphhllDsR............................... CONSENSUS/50% sssppspppp........ssschlllDlRs.............................s YQHL_BACSU/1-96 NEFEG--------------------GHILGA-------RNIPLSQLKQR----------- CONSENSUS/80% .pat.....................scl.su.......h.h.htth.t............ CONSENSUS/65% t-apt....................uHI.uu.......hplshpphhpt........... CONSENSUS/50% pEaps....................GHIsGA.......lslshsshtpptt.h....... YQHL_BACSU/1-96 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ YQHL_BACSU/1-96 ---------------------------------KNEIRTDKPVYLYC---QNSVRS---- CONSENSUS/80% ...................................t...tt.llhhs...tts.ps.... CONSENSUS/65% .................................ttthspsp.llhhC...psuhpu.... CONSENSUS/50% .............................thhtppshspccplllaC...puGt+u.... YQHL_BACSU/1-96 ---------------------GRAAQTLRKNGCT----------------------EIYN CONSENSUS/80% .......................hh.hhh.hshp......................thh. CONSENSUS/65% ......................thhhhlpphGhp......................plhh CONSENSUS/50% .....................spssthLcptGap......................pVhl YQHL_BACSU/1-96 LKGGFKKWGGKIKA CONSENSUS/80% htuuh.ta.tt... CONSENSUS/65% lpGGhptatpph.. CONSENSUS/50% LcGGapsWppssss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |