YM68_CAEEL/1-1 AYLVQAFTH-----ASYINNR--------------VTGCYQRLEFLGDAVLDYMITRYLF CONSENSUS/80% phh.pAhsp......sh..t..................p.ppLEalGDsllthhhsphlh CONSENSUS/65% plLhpAhTc.....tShtpp..................s.cRLEFLGDulLphhlsphLa CONSENSUS/50% sLLhpAlTH.....sShsss..................ssERLEFLGDAVLchllocaLa YM68_CAEEL/1-1 EDSRQYS----PGVLTDLRSALVNNTI-FASLAVKFEFQKHFIAMCPGLYHMI------- CONSENSUS/80% t.hsphp.....G.Lsthpsthlptpt.hs.huh.htht..................... CONSENSUS/65% ppaPphs....EGtLoph+utlVssps.huplupphtlt..................... CONSENSUS/50% ccaPcts....EGpLochRuslVsscs.LAplAcclsLs..................... YM68_CAEEL/1-1 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ YM68_CAEEL/1-1 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ YM68_CAEEL/1-1 ------------------EKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEE--DIEVP CONSENSUS/80% ....................................thh.hs.tt..pt........... CONSENSUS/65% ....................................phhhhspttthsttt......t.. CONSENSUS/50% ....................................calplupspptsssp......pps YM68_CAEEL/1-1 KAMGDIFESVAGAIYLDSGRN-LDTTWQVIFHMMR--GTIELCCA CONSENSUS/80% thhusshEuhhuAlhhcts....t.s.phh..hh.....ht.h.. CONSENSUS/65% phhu-shEAllGAlal-tG...hphspphltphhh...thpthp. CONSENSUS/50% sllADshEAllGAlYLDsG...lctscchlpshht..splcptst
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |