240292.Ava_0549_from_245_to_57KLDLRNLFT------FTITGI-------------NSDTKVIENA--------------IS CONSENSUS/80% R.Dhpp..........................IDs.ssp-hDDA..............l. CONSENSUS/65% RhDLpsh.........................IDstsu+DhDDA..............l. CONSENSUS/50% RpDLRcl.........hhT.............IDsssA+DlDDA..............lp 240292.Ava_0549_from_245_to_57LEKTIAG--------------NWQLGFHIADVSHYVQPDE---------PLDREAIKRGR CONSENSUS/80% hp....................h.lhltIADsshhlt.ss..........lDttAhpRus CONSENSUS/65% hcth.................taclhVtIADVotaVp.so.........sLDp-AhpRus CONSENSUS/50% lcphst...............sacLsVHIADVoaYVcsuS.........sLDcEApcRGo 240292.Ava_0549_from_245_to_57SVYLGE-LVLSMLPD-------------TVADRASL-VTGSDRLALSFLITISS------ CONSENSUS/80% shhh.t.thlsMLP..............lspthsSL...t.p+.shsh.h.hs.p..... CONSENSUS/65% olYhss.pslPMLP............ptLosslCSL.pss.-Rhshss.hplstp..... CONSENSUS/50% SVYhsc.+VlPMLP............cpLSsslCSL.sPsp-RLAlosphplssc..... 240292.Ava_0549_from_245_to_57----------------------QSGEVLEWE--------IQPSVINVDSN-ISKQQAEAI CONSENSUS/80% ........................hth.t.t........hh.shhpsttp.hsYppspth CONSENSUS/65% ........................Gplhshp........hhtullpopt+.loYpplpph CONSENSUS/50% ........................Gclpshc........ahculI+SsuR.LTYccVscl 240292.Ava_0549_from_245_to_57LQG---AAT----------------------------KKDSPQVIERLQNLTTIGQAIKE CONSENSUS/80% lpt........................................h...l..h.thhphhht CONSENSUS/65% lptt.....................................tthhttlp.lhpltphlpp CONSENSUS/50% l-spt.................................tphssltspLcsLpcLuctL+c 240292.Ava_0549_from_245_to_57SRLARGSLQLNLPSNH-------------------------------------------- CONSENSUS/80% .R.tpus.......t............................................. CONSENSUS/65% tRhpcGu.ht.p..c............................................. CONSENSUS/50% pRpc+Gu.lchcssE............................................. 240292.Ava_0549_from_245_to_57--------------------NPYYDEGS-------------------------------- CONSENSUS/80% ....................ph.htt.................................. CONSENSUS/65% ...................hphhhspptt............................... CONSENSUS/50% ...................sclplccpup............................... 240292.Ava_0549_from_245_to_57LGAVLVNDS-PVRSLLMELVLLVNELIAT----------HLSALGVP------------- CONSENSUS/80% ...........upphlp-hMlhAN.ssup..........hh.tt................ CONSENSUS/65% ..th...ppt.ucpllEEhMlhAN.ssAc..........hhtppths............. CONSENSUS/50% ..plhhhp+ssAccLIEEhMlhANpslAc..........alpcpphs............. 240292.Ava_0549_from_245_to_57AIWRTQGTPDSEDVQEMLKLAINLGVELALEPDV-------------------------- CONSENSUS/80% hhhRhp......t....h...ht..t.................................. CONSENSUS/65% hlaRhHttss.pph.pthtphhtthsh................................. CONSENSUS/50% slYRlHpsPs.c+l.pplpphlsphGhth.ttt........................... 240292.Ava_0549_from_245_to_57----DIEPLDYQQLTKAFAESPSEQ-------VLTYLLQDTLKPAVY----STTKAT--- CONSENSUS/80% ........tthtt.htph..t............h...h.psh.pu.h..t.......... CONSENSUS/65% ........tshtphhpphpspsp.........hlp.hhh+shppAhYssps......... CONSENSUS/50% ......pspshschLcclpspsp.......tphlpphllRuhspApYussshu....... 240292.Ava_0549_from_245_to_57------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 240292.Ava_0549_from_245_to_57----------HFGLALPQ-YTHFTAPLRRYPDLLMQRVYYQLLEH CONSENSUS/80% ..........pht.h....YsphTSPlRRYsDllsHR.lhthltt CONSENSUS/65% ..........Hau.LshthYsHFTSPIRRYsDLllHRhltthltt CONSENSUS/50% ..........HFG.LuhptYoHFTSPIRRYsDLlVHRhL+uhLss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |