RPB1_SCHPO/238 DWMIITVLPVPPPSVR---PSISVDG---TSRGEDDLTHKLSDIIKAN------------ CONSENSUS/80% phhhhphlPV.P.tlR...P.l.hts....hhspsDls.hhtpllttN............ CONSENSUS/65% cWhllsslPV.PsslR...P.l.hss...uthspsDLschhtclIppN............ CONSENSUS/50% EWMlLslLPVsPPslR...PhVpL-G...uphussDLschhpcIIp+N............ RPB1_SCHPO/238 --------ANVRRCEQE----------------------GAPAHIVSEY----------E CONSENSUS/80% ........ppltp...........................sst.hl.p............ CONSENSUS/65% ........spLcchhp........................usthllppp..........h CONSENSUS/50% ........s+L++lhch......................tAPstIlpsp..........c RPB1_SCHPO/238 QLLQFHVATYMDNEI--AGQPQALQKSG-------RPLKSIRARLKGKE--GRLRGNLMG CONSENSUS/80% phlQ.tlsshhsst........s....s.......+sh+ultphlcGKp..G+hRtsLhG CONSENSUS/65% chLQ.tVsshhDNt.......pup.hpu.......RslKSlsphLKGKp..GRhRpNLhG CONSENSUS/50% chLQcuVssLlDNs.....hpcupspsG......tRPLKSLoppLKGKp..GRFRpNLlG RPB1_SCHPO/238 KRVDFSARTVITGD-PNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNG------ CONSENSUS/80% KRVDaSuRoVIsss.PplphppsGlPh.hAhpLhhP.hhp.h..pth............. CONSENSUS/65% KRVDaSuRoVIsss.PpLplppsGlPtphAhpLhhP.hlsthshctl............. CONSENSUS/50% KRVDaSGRSVIos-.PsLclcplGlPcplAhcLTpPhllsphstcclpphh.ps...... RPB1_SCHPO/238 -PDEHPG-------AKYIIR--------DTGE-------RIDLRYHKR------------ CONSENSUS/80% .......................................t.tlp.hpt............ CONSENSUS/65% .......................................thslphs+p............ CONSENSUS/50% ..............ht.h.....................pssl+ts+c............ RPB1_SCHPO/238 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ RPB1_SCHPO/238 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ RPB1_SCHPO/238 -------------------------AGDIPLRYGW------------------------- CONSENSUS/80% .........................h.t.t...s.......................... CONSENSUS/65% .........................hhpppht.sh......................... CONSENSUS/50% .........................tlcpplshsa......................... RPB1_SCHPO/238 --------------RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPY------STFRL CONSENSUS/80% ...............l.cclhptc.llhNRtPoLH+huh.uapshlh.h.. .pshpl CONSENSUS/65% ..............pV.cclhcscsVLhNRtPoLH+hul.uacshllps.. .+sh+L CONSENSUS/50% ..............cVl++llcG-sVLLNRQPTLHRhSItAacs+llcG.. .+TlRL RPB1_SCHPO/238 NLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAG CONSENSUS/80% p..ssssaNADFDGDpMslHlP.o.puphEh..lhhs.ppllsPttspPlhs..QDhlhu CONSENSUS/65% p.hVsssaNADFDGDpMslHlP.S.cupuEsphLMhsspplloPpsGcPlhs.sQDhllG CONSENSUS/50% HPlVCsuYNADFDGDEMslHVPpShEApAEActLMhsspNILSPpsGcPllussQDhllG RPB1_SCHPO/238 VRKFS CONSENSUS/80% hhhho CONSENSUS/65% hYhlT CONSENSUS/50% sYhLT
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |