RPOA_MYCLE/7-2 RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDG------VLHEFTTVPGVKE CONSENSUS/80% .hch.lps....hshshuNulRRlhluphPshAlp.l.l.t............s.tsl.- CONSENSUS/65% pschslcs....hsholuNuLRRlLluplPshAlstVpIts............shsslt- CONSENSUS/50% cu+FllEPht.GausTluNALRRlLLSslPGhAlcpVcI-u......l.HEassssGVpE RPOA_MYCLE/7-2 DVTEIILNLKGLVVSSEED----------------EPVTMY----------LRKQGPGE- CONSENSUS/80% -hhthhLslh.lh.p....................tt.h............lphps.t.. CONSENSUS/65% -llthhLsLhslssc...................psstt.p..........Lphpussp. CONSENSUS/50% DVlsllLuLKsLsschps................csssstp........h.LcscGsGs. RPOA_MYCLE/7-2 -----VTAGDIVPPA--------------------------------------GVTLHNP CONSENSUS/80% .....lhutDl..........................................th..hp. CONSENSUS/65% .....VhuuDlpps.......................................slphhss CONSENSUS/50% .....VsAuDlpsss......................................-VEllNP RPOA_MYCLE/7-2 GMRIATLNDKGK-IEAELVVERGRGYVPAV---QNRALGAEIGRIPVDSIYSPVLKVTYK CONSENSUS/80% ph.lspLt.stp.lphphhs.hGhGh..up....st...t..s.h.lpt.hps..h.th. CONSENSUS/65% -hhIspLppspc.lphchhsp+GhGh..Ac...tststhc.hshl.lcs.hssspthphp CONSENSUS/50% DllIscLscGpc.Lclcscsc+GhGaspAchpsssssshchlstlhlDusaoPlcclsap RPOA_MYCLE/7-2 VDATRVEQRTD------------------------------------------------- CONSENSUS/80% ....ch..t................................................... CONSENSUS/65% spsscss.php................................................. CONSENSUS/50% l-ssRsspcs-................................................. RPOA_MYCLE/7-2 --FDKLILDVETKSSITPRDALASAGKTLVELFGLARE- CONSENSUS/80% ...s+hhhpltosGsl.spphh..uhphL.pphp.hhp. CONSENSUS/65% ..h-+hlhplEosGslpPcchltpAsclLtc+hphhhph CONSENSUS/50% ..hDKLllclETsGolcP-EulppAlcILp-+Lsshsch
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |