CAA85503/1-346 SSSQESPSLRIKARWQSVHIL--PLRAYDNLLETLCYNYL----------PLCEQLEPVL CONSENSUS/80% .......sh.hphhh.t.hh. ..p.hp.hh.hhh.t.. ..........h.hhtthh CONSENSUS/65% .tthp.hshplcshhtp.hhh s.p.hp.hhpLlh.p.t .........hhthlspls CONSENSUS/50% ppssstuolplcsshpscalh shptYccLlcLlLpsss .......tplsptLusVs CAA85503/1-346 NVRDKEDLATSLVRVMYKHNLAKEFLCDLIMKEVEKLDND---------------HLMFR CONSENSUS/80% p..thp.hs..hlphh.ppthht.hlp.lh..plp.....................slh+ CONSENSUS/65% ss.phsphuthLlplatppphhp.hlptlhttElpc.pps...............sslFR CONSENSUS/50% ss.stsslAssLVclFpp+spspsaLssLhppElc+sscs...............sTlFR CAA85503/1-346 GNTLATKAMESFMKLVADDYLDSTLSDFIKTVLQCED--SCEVDPQKLGNVS-------- CONSENSUS/80% t.slssp.hp.hhthhu.t.lp.shpshlpthhpppp...hEls..+............. CONSENSUS/65% usoLso+shp.hh+hhutpYLppsLpshlpplhppcc..shEl-Ps+ht........... CONSENSUS/50% uNSLAoKsl-pah+lsGspYLpssLcPlLccll-scc..usElDPsKlc........... CAA85503/1-346 -----NSSLEKNRALLMRYVEVAWTKILNNVHQLPKNLRDVFSALRCRLEA--------- CONSENSUS/80% ........hppphp.Lh.hhp.hhptlhpS.p.hP..lp.lhttl.phhtt......... CONSENSUS/65% .....tpsl-pphppLhthhpplhpsIhsSssphPhsl+.lhpslpphspp......... CONSENSUS/50% .....spslEsshcpLhpas-+lacuIlsSssphPhsLRpIh+sLppsspc......... CAA85503/1-346 ------------QNREA----LADTLISSSIFLRFLCPAILSPSLFNLVSE----YPSPT CONSENSUS/80% ............ph.t.......h.hlushlahRFhssAllsPp.htlhtp....p.s.t CONSENSUS/65% ............+Fspt...phthtsluuFlFLRFhsPAIloPchFplhsc....p.ssp CONSENSUS/50% ............+FPss...slphpuVSuFlFLRFlsPAIlSPctFsLlsc....psssp CAA85503/1-346 NARNLTLIAKTLQNLANFSK------FGGKEPHMEFM---NEFVDREWHRMKDFLLRISS CONSENSUS/80% sp+sLh.luKhlQslush.p........scc.ah..h...p.hh.pphtthhpah.pls. CONSENSUS/65% spRsLhhluKslQsluNhsp.......tsKEtahtsh...p.alppphsthtpFLpplsp CONSENSUS/50% spRoLsLlAKllQsLANhsp......hsuKEpaMpsh...NsFlcpphssl+cFL-clus CAA85503/1-346 ESKSG----PEKNADAI-------VDAGKELSLIATYLEEAWTPLLQEKNGN-------K CONSENSUS/80% ..........p..tt..............ph...t.hhhtt...lht..t.........t CONSENSUS/65% ss........cpsppt.............phthhppllhpp.ttltphtp.........p CONSENSUS/50% sspss.....-pspcsh.......h.sst-luslHpllhcpsptl+ctpsp........c CAA85503/1-346 HPLSNVKSVLSELAECKRRSDNGV CONSENSUS/80% t.h.th...h..h.....t....h CONSENSUS/65% p.hsphhhhht.ht.sppphstst CONSENSUS/50% cplschssphchhshsscchspsp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |