MMCDC25H_1/1-1 CKVLQIRYASVERLLERLTDLRF--------LSIDFLNTFLHSYRVFTNAMVVLDKLINI CONSENSUS/80% pt...l+.ushptLltplhtt...........s..a.tshLhsacshhssttlhthLh.h CONSENSUS/65% ssthhl+uuoh-tLlc+Lspphp........hD.paspsFLhTaRsFhostpllphLhpc CONSENSUS/50% sssspIKuGolE+Ll-HLocspp........sDssFlssFLtTYRoFhoos-LlstLlpR MMCDC25H_1/1-1 YRKPMSAIPARSLEL-------XXKEVFRRMSLAN-----TGFSSDQRNIDKEFVIRRAA CONSENSUS/80% a.h........................................................h CONSENSUS/65% Yphh.s..............................................t..t...h CONSENSUS/50% Ypthssp.....................tp...................h.pphhsthpl MMCDC25H_1/1-1 TNRVLNVLRHWVTKHTQ--DFDTDDTLKYRVIC--FLEEVMHDP-DLLTQERKAAANIIR CONSENSUS/80% p.thhplhhhhhpph....sa.tp.....hl.p..hhthht......h.t..tth.phht CONSENSUS/65% pt+lhpllphWlppahp..sFpps..hhhhlpp..hhphhptp....h.phhppltplhp CONSENSUS/50% ps+VlpllppWlcpaap..DFcscsphttpLcp..Ftchlcsc....hsptpssltsllp MMCDC25H_1/1-1 TLT CONSENSUS/80% th. CONSENSUS/65% php CONSENSUS/50% pls
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |