Consensus terms for the RelA_SpoT domain 

272558.BH1885_from_57_to_180SRVKSPESIVNKIQRRGNDFT----------LESIRENVRDIAGIRITCS----------
CONSENSUS/80%    uR.Kp..SlhpKh.tp................t..hppl.DlhuhRlls...........
CONSENSUS/65%    GR.KphhSIhpKhpp+................phthpplhDlhulRllsp..........
CONSENSUS/50%    GRsK+lYSIacKMp+K................ppshccltDlhulRIlVp..........


272558.BH1885_from_57_to_180------------FESDIYTLSEQLMQQH-------------------------DISVVET
CONSENSUS/80%    ...............phhthhthlct.............................h..ph
CONSENSUS/65%    .............hp-sYpsluhl+phh.........................p.hstch
CONSENSUS/50%    ............plcDCYplLGllHsta.........................cslPs+F


272558.BH1885_from_57_to_180KDYIKNPKPNGYRSLHLILSIPIFM----------------SDRVQDVYVEVQIRTIAMD
CONSENSUS/80%    cDals.sK.ssYpSlHhhl.h.....................t......hElQlRT.tMc
CONSENSUS/65%    +DYIuhPKsNGYpSlHsslhss....................st.....lElQIRThtMc
CONSENSUS/50%    KDYIusPKsNGYQSLHTsVhsP...................psps....lElQIRTpcMH


272558.BH1885_from_57_to_180FWASLEHKIYYKYNKNV
CONSENSUS/80%    .hAphthshpahaptt.
CONSENSUS/65%    thA-huhus+apYKpst
CONSENSUS/50%    phAEhGlAAHW+YKpss

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T