14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 -----MID---------------------------------------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 -----------------------LNEALAKDRWI-------------------------- CONSENSUS/80% ............................................................ CONSENSUS/65% ........................p...hhp............................. CONSENSUS/50% .......................hpshpthpt............................ 14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 14025717 GRLASHLDGFEALLDGQGY-----------------------------AKTTVQQKIKLL CONSENSUS/80% ...s..hthh.t.htt.th.............................sttsh..h.phh CONSENSUS/65% t.hs.hlcthtttlpstua.............................spsolpthhphh CONSENSUS/50% shhushl-sasspLcstGY.............................upsolppah+hh 14025717 AGFS-------AWVERQDVPLSLLG--EEDADLFLTELG----------------LRPRR CONSENSUS/80% t.h........thh.tps....t.....thh..hh......................... CONSENSUS/65% ttht.......sah.tpuhshhsh....shhttaht.h...........t.htt.ht.t. CONSENSUS/50% pths.......sahpppGtshhssp...-alptahpphh..........pchsthhp.tt 14025717 G--DAWTIRQLVRYLRDTGGV---PVL------LPEVDTSAKGKLIDAFGEFLRKERGLS CONSENSUS/80% ......h.hth.t.h.........................shtphh.sahta.hptpGls CONSENSUS/65% ...th.hhhphht.hpt.thh...stt......ts....sshtphhtsahtahtpt+GLu CONSENSUS/50% ...cthtsppllsahctpGhl...Psp......pPt...ushsshlsuFhsaLpccRGLu 14025717 ASTLTNYLPIIRGFLDE-QFGGKDPGFDHLRVGDVHRFIVR-RAQAGSLGRAKLAVTALR CONSENSUS/80% .tol.tah..hpta.t....sts..t.tthpst.l.taht....hthp.ttht.hhshlR CONSENSUS/65% .solppahhhlRcFhs....spsh.thstlpsspl.palp..pttthshpphphhsstlR CONSENSUS/50% suTlpsYhhhlRcFLsh.hhuputsshstlsssslpsalpt.pspshotpsscphlssLR 14025717 SFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPAGRRDYAV CONSENSUS/80% sFl+ahh.pG.httsLstsls.sthh+.ttlPphhs.tplptllsuhsppsshuhRDaAl CONSENSUS/65% uFLRYhtpcGhhspsLspslPtsptaRtsplPpsls.pplcpLLuuhcRssshGtRDYAI CONSENSUS/50% uFLRYLtc+GhsAsDLscuVPplRsaRtsslP+slss-clE+LLuSlDRssshG+RDYAI 14025717 LMLLARLGLRGGEVSALTLDDLDWDCGEIVV-HGKGQRLARLPLPADVGAALVDYLRQDR CONSENSUS/80% lhLhAhhGLRss-lhsLpLcshcWptt.l.l.ptKstp..hhPLsspVGtAlhpYLp.tR CONSENSUS/65% lhLhAphGLRuuEltsLpLDDlDWcpsplhl.ptKspp.spLPLsucVGtAlhcYL+ssR CONSENSUS/50% LLLLA+LGLRAuEVsuLpLDDlDWcsupLsl.psKo+csscLPLsu-VGcAllcYL+sGR 14025717 P-ACSTRRVFIRTRAPRRGFVSQSTICCIVRRALKRAGLTP---AFKGAHLLRHSLATDL CONSENSUS/80% s.tssp.hlFlphhuPhhshtp..tlttlhttthcpsGlp....shhGs+.hRHuhApph CONSENSUS/65% P.sssspplFl+hhuPhhshpsh.sltpllppth++uGlps...sttGuHhLRHuhAspL CONSENSUS/50% P.cSssR+VFLRspAPapshssssslssIVscsL++uGIss...spsGuHsLRHSLAocL 14025717 LRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIALPWPGVAS--------- CONSENSUS/80% lptshsh..IuthLtHpp.poT.lYh+lshttL+ths..hst............ CONSENSUS/65% lctssslttIuphLtHps.poTtlYs+VDlptLRphulshPsss.......... CONSENSUS/50% LcpGsslssIGclLGHpss-STplYuKVDlctLRplALshPussh.........
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |