224911.blr3492_from_60_to_126/VGYFVAARP--LSRGTLARD---------------EDFAVRS-A----LPERLP------ CONSENSUS/80% .tshhshps..l..Gphlt................ttl............t...t..... CONSENSUS/65% tpsllstps..lttGphlst...............pslt...h.......p.hst..... CONSENSUS/50% ssVlVAs+s..lssGphlss...............sclshtph......hsslss..... 224911.blr3492_from_60_to_126/--AGAILETPDAK--------------------------AGLTG---------SLVRKFV CONSENSUS/80% .....h...t...............................hh...........hhhtsl CONSENSUS/65% ...tslhphtt..............................llG.........thstpsl CONSENSUS/50% ...sslpshsp..............................llG.........ppsppsl 224911.blr3492_from_60_to_126/EAGSPITL-QDVL CONSENSUS/80% ..sp.l.. t.l. CONSENSUS/65% ttGp.lp. pplt CONSENSUS/50% psGcslpt sslp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |