624028/1-50 IKGPWTKEEDQRVIELVQKYGP-------------------------------------- CONSENSUS/80% ttt.ao.pEpthhhphht.hs....................................... CONSENSUS/65% ppstWotcEcphlhphhpphG....................................... CONSENSUS/50% p+ssWTpEE-ctLlctlcpaG....................................... 624028/1-50 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ 624028/1-50 ---------------------------------------------KRWSLIAKHLK---- CONSENSUS/80% .............................................tpat.lst.h..... CONSENSUS/65% .............................................tpWptIupths.... CONSENSUS/50% .............................................scWspIAcpls.... 624028/1-50 ---------GRIGKQCRERWHNHLNP CONSENSUS/80% .........t+s..phh.ha.phht. CONSENSUS/65% .........sRosppspp+atphhpt CONSENSUS/50% .........sRosppl+p+apshhcp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |