VA52_DOLMA/1-1 DEKNEILKR-HNDFRQNVAKGLETRG-------------KPGPQPPAKNMNVLV-WNDEL CONSENSUS/80% t..pthlp..HNthRttls..............................h..h..Wstpl CONSENSUS/65% stppphlsh.HNphRsplu.............................phhthp.Wsspl CONSENSUS/50% ssppshlst.HNchRuplu.u.......................s.upsMhcls.WDspL VA52_DOLMA/1-1 AKIAQTWANQ------CDFN--HDDCRNTAKY------QVGQNIAISSTT----ATQFDR CONSENSUS/80% tt.AptaApp......C.h...Hs...............hGcNlhhh............. CONSENSUS/65% sp.ApsaAsp......Csht..Hot.............thGENlhht.s........tht CONSENSUS/50% AstAQsaAsp......Csht..HSs............sshGENLahssus.....shsps VA52_DOLMA/1-1 PSKLIKQWEDEVTEFNYKVGLQN------SNFRKVGHYTQMVWGKTKEIGCG-SIKYIED CONSENSUS/80% ht.uht.W.pEhtthshtt..............hhuHhTQhsWtpo.tlGCu.h..s.tt CONSENSUS/65% sstAlphWhsEhppasassspht.........pshGHaTQhlWtpohclGCu.hhpCsss CONSENSUS/50% ussAlpsWhsEhpcasasossssss.......pslGHaTQlVWssTpclGCG.sspCsss VA52_DOLMA/1-1 NW------------YTHYLVCNYGPGGNDFN CONSENSUS/80% ................hhhsCpYts.GNh.t CONSENSUS/65% t...............hhllCpYsPsGNhhs CONSENSUS/50% s..............phalVCpYsPsGNhhu
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |