281309.BT9727_3040_from_12_to_PLLR----ENVKNVER----------ELGIHFPLDYIECVMKNNGAHVSPEVFEVEGK-- CONSENSUS/80% shs.....ttl.thpt...........hth.hPtphhthh..hss............... CONSENSUS/65% sssp....ppltphEp...........hshpLPpshpphhtthsus.h............ CONSENSUS/50% ssop....ccIpclEc..........pLshsLPs-a+cFlpppsGutht.t......... 281309.BT9727_3040_from_12_to_----RKVFGTLLTYDMDDDE---------------------------------------- CONSENSUS/80% .......h.....ht............................................. CONSENSUS/65% .......h.tht.hshtt.......................................... CONSENSUS/50% ......tlsshphhstppt......................................... 281309.BT9727_3040_from_12_to_------------------------------NIIEVFNDY-------NGTLPSALVPFAFD CONSENSUS/80% .....................................................h..htt. CONSENSUS/65% ......................................h..th...thhhsthhhhhsst CONSENSUS/50% ................................htthtphspphhppphthsstllhhsss 281309.BT9727_3040_from_12_to_PA-GNLICFDYKNHKEDPIVVFWEHEGAWEKETLMESEGITAEEAEEVARENVFFVANDF CONSENSUS/80% .t...hh...............h...................................th CONSENSUS/65% ssthhhhhhtst.........hhhh.ttt..........................hhtsh CONSENSUS/50% susshhhshsssstt..tthhhlhhscppspp......................hlsssF 281309.BT9727_3040_from_12_to_TEFLNK CONSENSUS/80% tpal.t CONSENSUS/65% pcaltt CONSENSUS/50% s-aLpp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |