DMD401_1-640 LQLDTVLGEGEFGQVLKGFATEIAG---------LPGITTVAVKMLKKGSNSV------- CONSENSUS/80% l.h.p.lGpGtFG.Vh.u.h..................h.VAlKhhpttt.......... CONSENSUS/65% lphtchLGpGtFGpVhpGhhpt...............thpVAlKhl+psst......... CONSENSUS/50% lslscpLGcGsFGcVacGphpst.............tphpVAVKsLKsssst........ DMD401_1-640 -----EYMALLSEFQLLQEV---------SHPNVIKLLGACTSS---------EAPLLII CONSENSUS/80% .....t.tthhpEhphhtph. .pH.pllphhGhsh...........t.hhhlh CONSENSUS/65% .....phpphhpEhplMppl. .pH.NllpLhGlshpt.........pshhllh CONSENSUS/50% .....ppp-FhcEAclMppL. .cHsNlV+LlGlCsps.........pPlhllh DMD401_1-640 EYARY--GSLRSYLRLSRKIE---------------CAGVDFADGVEPVNVKMVLTFAWQ CONSENSUS/80% Ehh... GsL.paLpttt..............................ls..phhthshp CONSENSUS/65% Ehhpt. GsLhpaL+ppptt............................lshtpllphuhQ CONSENSUS/50% Easst. GsLpsaL+cscsp............................lshscLlsaAhQ DMD401_1-640 ICKGMAYLSEL---------------KLVHRDLAARNVLLADGK---------ICKISDF CONSENSUS/80% lupGMtYLtph...............thlHRDLAsRNhLlspt...........hKluDF CONSENSUS/65% lApGMpYLppp...............phlHRDLAARNsLlspst.........hlKIuDF CONSENSUS/50% IApGMcYLcs+...............phlHRDLAARNlLlscsp.........tlKIuDF DMD401_1-640 GLTRDVYEDD---------AYLKRS---RDR--VPVKWMAPESL------ADHVYTS-KS CONSENSUS/80% GLu+.h.t.... .......hh.......tc..hPl+WhusEsh .. ....thao. to CONSENSUS/65% GLuRthhpt... ......phhph....ts+..lPl+WhAPEsl .. ..ppthaop pS CONSENSUS/50% GLoRsltss... ......cYYps....su+..lPl+WhAPEul .. ..ppspFoo KS DMD401_1-640 DVWSFGV-LCWELITLGASPYPG-------IAPQNLWSLLKTGYRMDRPEN--------- CONSENSUS/80% DVWuaGl.hhaElhohGt.Pa.t.......h.s.phhthltps.hh..s......... CONSENSUS/65% DVWSFGV.hlWElhohGtpPYss.......hsspclhphlppGh+h.pPtp....... CONSENSUS/50% DVWSFGV.lLWElaohGppPYss.......hssp-lhptlcpGtRlspPps....... DMD401_1-640 -------------------------------CSEAVYS-IVRTCWADEPNGRPSFKFL-- CONSENSUS/80% .....................ss.thht.lh.tCWt.pstpRPsFttl. CONSENSUS/65% .....................CssplYp.lMtpCWptpPppRPsFppl. CONSENSUS/50% .....................CPsclYs.lMppCWppcPccRPoFspl. DMD401_1-640 ---ASEFEKLL CONSENSUS/80% ....hp.h CONSENSUS/65% ....hphl CONSENSUS/50% ....tcpL ------------------------------------------------------------------------------- RNU78857_1-359 YKVGRTIGDGNFAVVKECIERS--------------TAREYALKIIKKSKC--------- CONSENSUS/80% a.hhp.lGpGsau.Vhhshpht..............stp.hAhKhlpht........... CONSENSUS/65% aphhchlGpGsaGpVhhshppp..............ssphhAlKhlptpt.......... CONSENSUS/50% YclhcplGcGuFGpVapupcps..............oschlAlKhlccpph......... RNU78857_1-359 ---RGKEHMIQNEVSILRRV---------KHPNIVLLIEEMDVP---------TELYLVM CONSENSUS/80% .......tth.pEhthhtth.........pc..llphhthh.t..........t.hhhlh CONSENSUS/65% ......hpphhpElplhppl.........pHspllplhthhpsp.........splallh CONSENSUS/50% ....tptppltcElplLppL.........cHPNIVpLhcsapss.........splalVh RNU78857_1-359 ELVKG--GDLFDAITSTSK------YTERDASGMLYNLASAIKYLHSL-NIVHRDIKPEN CONSENSUS/80% -hhtt...plhphl.t.........h..t.ht.hhhplh.ultahHp..tllHRDlKstN CONSENSUS/65% Eahss..scLhphlpppt.......hscptsphhhtpllpulpalHpp.sllHRDlKPpN CONSENSUS/50% EassG..G-Lhchlpppst......lsEsps+phhpQllpuLcYLHsp.sIlHRDLKP-N RNU78857_1-359 LLVYEHQD-----GSKSLKLGDFGLATIVDGP-------------------LYTVCGTPT CONSENSUS/80% lllstp...........lKlsDFGhut.ht.....................htshhuo.. CONSENSUS/65% lLlspp.........tplKlsDFGluphhptt..................hhpshsGT.. CONSENSUS/50% lLLsss.........splKLsDFGlA+phssst.................ptsohlGTst RNU78857_1-359 YVAPEIIA------ETGYGL-KVDIWAAGV-ITYILLC-GFPPFRG-----SGDDQEVLF CONSENSUS/80% ahuPEll.......tt.as..tsDhWuhGh hhhthhh.s...a.s.......tt...hh CONSENSUS/65% YhAPEll.......tptYst.tsDhWSlGs lhhphls.GpsPF.s.......pphtthh CONSENSUS/50% YhAPEllh......spsYss.slDlWSlGl llaElls.GcsPFsu.......sshpplh RNU78857_1-359 DQILMGQVDFPSPYWDN-------------------------------------VSDSAK CONSENSUS/80% p.hh..................................................hs.thh CONSENSUS/65% phhhp.................................................hstpst CONSENSUS/50% ctltssphphs.t.........................................lSscup RNU78857_1-359 E-LINMMLLVNVDQRFSAVQVLE-------HPWV CONSENSUS/80% p.hlpthl.hsstpR.shtphht.......c.ah CONSENSUS/65% s.llpphLphsPppRhsstphhp.......Hsah CONSENSUS/50% -.Llp+hLsh-PscRlospcsLp.......HPah
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |