RNU78857_1-359 YKVGRTIGDGNFAVVKECIERS--------------TAREYALKIIKKSKC--------- CONSENSUS/80% a.hhp.lGpGsau.Vhhshpht..............stp.hAhKhlpht........... CONSENSUS/65% aphhchlGpGsaGpVhhshppp..............ssphhAlKhlptpt.......... CONSENSUS/50% YclhcplGcGuFGpVapupcps..............oschlAlKhlccpph......... RNU78857_1-359 ---RGKEHMIQNEVSILRRV---------KHPNIVLLIEEMDVP---------TELYLVM CONSENSUS/80% .......tth.pEhthhtth.........pc..llphhthh.t..........t.hhhlh CONSENSUS/65% ......hpphhpElplhppl.........pHspllplhthhpsp.........splallh CONSENSUS/50% ....tptppltcElplLppL.........cHPNIVpLhcsapss.........splalVh RNU78857_1-359 ELVKG--GDLFDAITSTSK------YTERDASGMLYNLASAIKYLHSL-NIVHRDIKPEN CONSENSUS/80% -hhtt...plhphl.t.........h..t.ht.hhhplh.ultahHp..tllHRDlKstN CONSENSUS/65% Eahss..scLhphlpppt.......hscptsphhhtpllpulpalHpp.sllHRDlKPpN CONSENSUS/50% EassG..G-Lhchlpppst......lsEsps+phhpQllpuLcYLHsp.sIlHRDLKP-N RNU78857_1-359 LLVYEHQD-----GSKSLKLGDFGLATIVDGP-------------------LYTVCGTPT CONSENSUS/80% lllstp...........lKlsDFGhut.ht.....................htshhuo.. CONSENSUS/65% lLlspp.........tplKlsDFGluphhptt..................hhpshsGT.. CONSENSUS/50% lLLsss.........splKLsDFGlA+phssst.................ptsohlGTst RNU78857_1-359 YVAPEIIA------ETGYGL-KVDIWAAGV-ITYILLC-GFPPFRG-----SGDDQEVLF CONSENSUS/80% ahuPEll.......tt.as..tsDhWuhGh hhhthhh.s...a.s.......tt...hh CONSENSUS/65% YhAPEll.......tptYst.tsDhWSlGs lhhphls.GpsPF.s.......pphtthh CONSENSUS/50% YhAPEllh......spsYss.slDlWSlGl llaElls.GcsPFsu.......sshpplh RNU78857_1-359 DQILMGQVDFPSPYWDN-------------------------------------VSDSAK CONSENSUS/80% p.hh..................................................hs.thh CONSENSUS/65% phhhp.................................................hstpst CONSENSUS/50% ctltssphphs.t.........................................lSscup RNU78857_1-359 E-LINMMLLVNVDQRFSAVQVLE-------HPWV CONSENSUS/80% p.hlpthl.hsstpR.shtphht.......c.ah CONSENSUS/65% s.llpphLphsPppRhsstphhp.......Hsah CONSENSUS/50% -.Llp+hLsh-PscRlospcsLp.......HPah
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |