1PBV TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQ----NTPEEIARFLY------------ CONSENSUS/80% .h..pt.h..s.t..s..sppult.h.t.th.t....ps.tpluphhh............ CONSENSUS/65% .tpppp.htpstpthsppPcculphL.ppshls....psspplAphhh............ CONSENSUS/50% p+pp+cplspGsspFNpcP++GlshLpspuhls....cospclAcaLh............ 1PBV -------------------KGEGLNKTAIGDYLGE--REELNLAVLHAFVDLHEFTDLNL CONSENSUS/80% ...................t.tthstp.luphls....p..p..lhtthhp.hphpsh.h CONSENSUS/65% ...................pppslspphlGcaLsp..tsthshtllptalc.asFpshsl CONSENSUS/50% ...................pscsLs+sslG-aLGc..pcctsppVLcsalcpa-Fsspcl 1PBV VQALRQFLWSFRLPGE-AQKIDRMMEAFAQRYCLCNPGVFQ---------------STDT CONSENSUS/80% .tALR.hh.thhl.tE.sppl-chh.tFutpahtpp.t.h................s.Ds CONSENSUS/65% spALR.aLpphcLPGE.uQcI-RlhptFupcahpsNsthht...............ssDs CONSENSUS/50% lpALRpFLpsFRLPGE.uQKIDRllcsFop+YhcsNPushp...............ssDu 1PBV CYVLSFAVIMLNTSLHNPNVRD-------------KPGLERFVAMNRGIN---------- CONSENSUS/80% hahlsauhlhLsochassphtp.............chohppahp..pt............ CONSENSUS/65% salLuaulIhLNTDLHsspl+p.............+MohpcFlpsscshs.......... CONSENSUS/50% sYlLAYSlIMLNTDLHNPsVKc.............KMTpc-FlcNs+Gls.......... 1PBV --EGGDLPEELLRNLYDSIRNEPF CONSENSUS/80% ..tttphs.thLtthapplttpth CONSENSUS/65% ..sutslspchLpplYcsIpspph CONSENSUS/50% ..sGpDlscEaLcclY-sIpscEl
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |