SM3A_CHICK/57- YHTFLLD---EERSRLYVGAKDHIFSFNLVN-IKEYQ-----KIVWPVSHSRRDECKW-- CONSENSUS/80% hp.hhht.....tttlhlGuhstla.ls.t...........h..h...s...t....... CONSENSUS/65% hpthhhp...ttpsplaVGupsplatLshs..p..p.....hhhh.sssspppp.s.... CONSENSUS/50% hpslllc...pssspLaVGA+N+lasLshsslpppps....tpsssssssspspsstts. SM3A_CHICK/57- -AGKDI------------------LRECANFIKVLKTYNQ-----THLYACGTGAFHPMC CONSENSUS/80% .t.......................tps.Nhl.ll....t.....stlhsCGo.shpshC CONSENSUS/65% .p.......................p-stNhlhllhsh.t.....spLhsCGo.uhpshC CONSENSUS/50% tpsp.....................s-CpNal+lLtshss.....s+LlsCGTsAapPsC SM3A_CHICK/57- TYIEVGSHP----EDNIF------------------------------------------ CONSENSUS/80% thhtht...................................................... CONSENSUS/65% thhphssh.................................................... CONSENSUS/50% phhslsshp................................................... SM3A_CHICK/57- RMEDSH----FENGRGKSPYDPKLLTASLLV-DG-------ELYSGTAA-DFMGRDFAIF CONSENSUS/80% ..........................................hasuss..s..stt.hh. CONSENSUS/65% .............u.hhsPh..t.t...h............tLasuss..sh.upsshhh CONSENSUS/50% ....tt......sGhutsPasPppsssulh..ps.......pLYsGTsh.Da.Gs-shlh SM3A_CHICK/57- RTLGHHH--------------PIRTEQHDSRWLN---------DPRFISAHLIPESD--- CONSENSUS/80% +......................hs...t..............t.pal.sh......... CONSENSUS/65% Rshs..................hpT...s.thhp.........pspFVtuat........ CONSENSUS/50% Roluh+h............t.sl+TtphspphLs.........cspFVsuFp........ SM3A_CHICK/57- NPEDDKIYFFFRENAIDG------EH-TGKATHARIGQICKNDFGGHR-SLV-NKWTTFL CONSENSUS/80% ...sphlYFhhhp.t.............tt.hhsRlsRlChtD...........phtoah CONSENSUS/65% ..psshlYFhhpppshp........t.tsphhhoRluRlCpsD..........pcasoal CONSENSUS/50% ..ss-aVYFFFpEsus-t......ts.sucshhSRVARlC+sDhGGtt..L..s+WoSFL SM3A_CHICK/57- KARLICSVP-----------GPNGIDTHFDELQDVFLMNSK-----------DP-KNPIV CONSENSUS/80% ch.L.Cphs.................h.as.lpshh.h.................tp.hl CONSENSUS/65% cstLtCshs...........t....shhas.lQsshhh.st...........s..ppsll CONSENSUS/50% KA+LsCShs...........up..hshhFshLQusahhsss...........s..scsll SM3A_CHICK/57- YGVFT--TS------------SNIFKGSAVCMYSMTDVRRVFL-GPYAHRDGP---NYQW CONSENSUS/80% ausFs..ps.............ts..tSAlCha.htplpthhp...http.t....t.th CONSENSUS/65% aulFs..ss.............sshtsSAlCsashpsIppsFp...hppppps...ssph CONSENSUS/50% YGVFo..os............ssshssSAVCsFsls-IppsFs.Gsaccppss...sspa SM3A_CHICK/57- VP-Y-QGRVPYPRPGTCPSKTFGG-----FDSTKDLPDEVIT--FARSHPAMYNPVFPIN CONSENSUS/80% ...h.t......tsttC.t...........................p.h....tsh.sh. CONSENSUS/65% h..h.pt.h..spsupC.p.............t..hPpp.hp..hhcppshh.tsl.shp CONSENSUS/50% hs.h.psplPhPRPGsCssssh.........sopshP-cslp..hs+p+PLhtpuVsPlp SM3A_CHICK/57- SR-PIMIKTDVDYQFTQIVVDR-VDA---EDG----QYDVMFIGTDIGTVLKVVSIPKET CONSENSUS/80% t..slh.....t..hoplh.................thslhalGTptGplhphh...t.. CONSENSUS/65% st.Plhhtt.sph.hTpls..........hs....tphsVhalGTspGplhKllh..sts CONSENSUS/50% up.PlhhcpssshplTplslc..hts...tst...psasVlFlGTssGpllKlVlsssps SM3A_CHICK/57- W----HELEEVLLEEMTVFRE--PTVIS-AMKISTKQ CONSENSUS/80% ............h.phtl.....sp.l..ph.h..tt CONSENSUS/65% ...........hhpphplh....spslp.shhlsspp CONSENSUS/50% s.......t.hhl-Elplhp...usPlp.slplsssp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |