Consensus terms for the TFIIA domain

8364.ENSXETP00000049038_from_12_to_472KLYKSII-EDVM----ESVRELFVEE-GVDEQVLKDLKQL--------------------
CONSENSUS/80%    plYpplI.p-Vl....pts+..F.pp.Gl--psLp-L+ph....................
CONSENSUS/65%    plYpsVI.-DVI....sslRp.F.-p.GV--pVLp-L+pl....................
CONSENSUS/50%    +lYcoVI.-DVI....suVR-sFt-E.GVDEQVLpEL+pl....................


8364.ENSXETP00000049038_from_12_to_472---------WETKVLQSKATEGFFRDNS-------------------APQFVLQLPQNLH
CONSENSUS/80%    .........WppKl.p.tshp...p..............................stt..
CONSENSUS/65%    .........WppKlhpspssch.hcsp............................sps.p
CONSENSUS/50%    .........WEsKLhQo+Ascssacsss....................st.s.phspshp


8364.ENSXETP00000049038_from_12_to_472HSLHSSTGNRNVtHFSTGE--------------------------MGTSGSNSAFSLPAG
CONSENSUS/80%    ...t......t.................................................
CONSENSUS/65%    ts.ps.....t.h..ss........................................sst
CONSENSUS/50%    pshpss..ssA.h.hPs................................t..ts.thsss


8364.ENSXETP00000049038_from_12_to_472ITYP-IHLPAGMTVQTASGQLYKVT-VPVM-VTQAPGGPRILQPPVQQF-FQHIRHPSGH
CONSENSUS/80%    .shP..t.sst.........................st...h....t...ht....s...
CONSENSUS/65%    hshP.hthPsshsh.tsts..h.........ssts.utsshhpp..t...hp..h.sssh
CONSENSUS/50%    luhP.tpsPuusshtsssuphhth.......sssssGsssllpssssps.hpptstPsst


8364.ENSXETP00000049038_from_12_to_472AASSQYSRN---AYIEQKWQQQPAQVHSSEGLNI--YDQEATIEPNYQNN-NNDDLIiQQ
CONSENSUS/80%    .t..........................h.............h...p.pt..........
CONSENSUS/65%    .ssh.t.s..................t.hh...s..hhsstssst.p.pp..........
CONSENSUS/50%    ssssspsss...........ttp.thpsltspss..stsssssspppsps....th.hss


8364.ENSXETP00000049038_from_12_to_472------SIDLQQNLTNKGLHQPTNSLEGSNLNEI---------------TGTLFSPRQSN
CONSENSUS/80%    ............t.......t.......................................
CONSENSUS/65%    ........t..pt.tt...tpts...tt.shs...........................t
CONSENSUS/50%    .......tpphppsppthtspssthtppsshssh.....................p.pss


8364.ENSXETP00000049038_from_12_to_472GGIDLNSESVMNNLNMAHSLQGQPENEYASLLKSQDSDDVVELILMdnelgdktstgdsg
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ...t........................................................
CONSENSUS/50%    tths.ttpth..................................................


8364.ENSXETP00000049038_from_12_to_472nvgiqtgisnvekqavpreiEIIQVDGTGDTSSDEDLGNVRDLDENDFLGIIDTEDLKAL
CONSENSUS/80%    .....................hhph-Gss...s.pt.tt.....................
CONSENSUS/65%    ....................phhQlDGsssssspc-.ppttp.tp...............
CONSENSUS/50%    ..............ttt.h.cllQlDGuuDsosp--ppppschpct..............


8364.ENSXETP00000049038_from_12_to_472------EEDDTAS-------NDSTSNSSD--DEDPEIDVIEEDPLNSGDDVS-EQEVPDL
CONSENSUS/80%    ..........................t....ttt...t..-E-slNSt.Dss.-p-.s-.
CONSENSUS/65%    ....................ttt.ttp.-..ptsttts.s-E-sLNSsDDss.D--hs-h
CONSENSUS/50%    ....................pcs.ssssD..cc-spssssEEDPLNS-DDVo.D-DlsDL


8364.ENSXETP00000049038_from_12_to_472-FDTDN-----VIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVFSKAIGEAEW
CONSENSUS/80%    ..-s-s.....lhlCpYDKlpRsKN+WKhhLKDGlhshsG+-YlFpKu.G-hEW
CONSENSUS/65%    .aDs-s.....VllCQYDKlpRsKNKWKhhLKDGlMshsGKDYVFpKAsG-hEW
CONSENSUS/50%    .FDTDN.....VlVCQYDKIpRoKNKWKFaLKDGIMslsGKDYVFpKAsGEAEW

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T