7227.CG10631-PA_from_3527_to_3KQCCLPYCRA----FRGD--------GIKLFRLPN------------NRTSIRNWE--LA CONSENSUS/80% ..C.h.tCt..................hthapaP................hht.Wht.ht CONSENSUS/65% tpCss.sCps..p.t............hphapFP.............s..hhppWhpshp CONSENSUS/50% ppCslssCss..ppsp...........lsaa+FPt...........psptptcpWlcslp 7227.CG10631-PA_from_3527_to_3TGMVFK--------ESQRNTRLICSRHFE-PELIGV-----------------RRLMRNA CONSENSUS/80% h.....................lCptHFt..ptht....................lh.tu CONSENSUS/65% htt..........t...ht..hlCspHFp.tpshpt.................hhLp.sA CONSENSUS/50% psp.........sstptsp..hlCucHFc.scsaspt................ppL+ssA 7227.CG10631-PA_from_3527_to_3IPTRHLSPQAP CONSENSUS/80% lPsh....... CONSENSUS/65% lPolh..ttt. CONSENSUS/50% VPTlahsssss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |