Q9VM22/232-400 RPIIELPHVLYINAQLPREHRHK--WRFLFSSKINGESFSTMLGKVLDKGP--------- CONSENSUS/80% pthlp...h..l.s.hP.p......hh.laps..HG.uhtphhtphtt.t.......... CONSENSUS/65% splLs.thht.lhshlPhcttth..WpllasoppHGhShsshhpphtthps......... CONSENSUS/50% oplLsscphpplsutLPs+tpth.sWsLLYooppHGhSLsohap+ssshcs......... Q9VM22/232-400 -------------TLFFIED---------------------------------------- CONSENSUS/80% .............slhllcs........................................ CONSENSUS/65% .............slllIcs........................................ CONSENSUS/50% ............ssLllI+D........................................ Q9VM22/232-400 ------EDQYIFGGYASETWSVKPQ---------FGGDDSS-LLYTLS------------ CONSENSUS/80% ......pct.lhGshhsp.ht.pst.........ahGstps.hlaph............. CONSENSUS/65% ......pcpplaGuhsSpshc.psp.........FaGsscs.hLapls............ CONSENSUS/50% ......s-ppVFGAasSssa+sssc.........FaGou-o.FLFpLs............ Q9VM22/232-400 -----------------PAMRCFSATTYNN------------------------------ CONSENSUS/80% ..................ththa.hss................................. CONSENSUS/65% .................Pphthaphssts............................... CONSENSUS/50% .................PchpsasaTGpsp.............................. Q9VM22/232-400 ---------------HYQYLNLNQQTMPNGLGMGGQFDFWGLWIDCSFGDGQS--VESCT CONSENSUS/80% .................hhhtht.pths.Ghu.ut.....tlhl-tsht.s.sp....s. CONSENSUS/65% .................hhlptp.pslshGuG.Gp.....uLalDsshspGpop...tsp CONSENSUS/50% .................aalssspcolshGuGsGp....huLalDs-LspGpop...pCs Q9VM22/232-400 TYRDYVQLS---------------------KRKQFKIRNMEVWAVG CONSENSUS/80% sh.s.s.........................t.ph.l.slEsash. CONSENSUS/65% Tatstshh.......................pppFhItslEsWuhs CONSENSUS/50% TasNpPLss......................sccFpIpslElWuhs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |