AB50173|CAB501 SALMIVESPNKARTIASFFGQPSKRRIG-------------------ELVAYEVSIGDKM CONSENSUS/80% p.lhlsEt..pshthtphh...................... .................. CONSENSUS/65% ptllllEu.tcshsltphhh..................... .................. CONSENSUS/50% cslllVEussDstslpphts..................... .................t AB50173|CAB501 LTILASGGHMFDLVTTEGYHGVL-ILKDDGKPYYVPVYDTIKRCRDCGHQFVDWEQK-GV CONSENSUS/80% ..hhs.hGth.................................................. CONSENSUS/65% hhshushGph.................................................. CONSENSUS/50% tplsustGpl.................................................. AB50173|CAB501 CPKC-GSRNVHDALENVKAMRELALEV----DEILIGTDPDTE---------GEKIAWDI CONSENSUS/80% ..............t.hp.ltphh.t.......lhlhhDsDtt.........Gpthshph CONSENSUS/65% ............tpphlphlpchtpp.......lllshDsDpt.........Gcthuhcl CONSENSUS/50% ...........tsccplctl+ctscc.....ppVllusDsDcE.........G-sluhcl AB50173|CAB501 RNVLSPYTP CONSENSUS/80% hp.ht.... CONSENSUS/65% hphhpshsh CONSENSUS/50% hchlpspst
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |