340047.MCAP_0259_from_137_to_202GTNILKF-----------EDYQ------------------DYTY--------VSFISKDN CONSENSUS/80% G.......................................thth........huhhshst CONSENSUS/65% Gph.l..............p....................ptph........huhlshsp CONSENSUS/50% Gpapl.............hpts..................sspa........lSllPlus 340047.MCAP_0259_from_137_to_202TN----ITIKDLKYEC--------------ENLSLSAYSNSCLS-NAFL-PYK------D CONSENSUS/80% ......hshpsh+asl...............s..h.h.t.hs.S.Nthh.tt........ CONSENSUS/65% hs...tlohpGhKasL..............pshshthspthshS.Nchh.spt.....hp CONSENSUS/50% ss...slolcGhKYsL..............pstslshGsslssS.NEhl.ssp.....ss 340047.MCAP_0259_from_137_to_202GIISSNNPI CONSENSUS/80% hphpps..l CONSENSUS/65% lslcsGhhl CONSENSUS/50% lolcsGpll
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |