5061.CADANGAP00000877_from_24_to_164KLIESNALSICQDSSN------FTATYFSVTFTPGNRSLTFSF----------------- CONSENSUS/80% t.h.stsh..C.pss.......hpsp.hpl.a..ts.ph.hsh................. CONSENSUS/65% phltosulssChssSt......hssshhslpahPsstolsasl................. CONSENSUS/50% ctLposuLssCh-sSs......louohFcVsFsPsNpolsFsl................. 5061.CADANGAP00000877_from_24_to_164----------------------DGVSAISGKVT-----------------AELVLEAYGI CONSENSUS/80% ......................ss.sthps.lh.................splpl.sYG. CONSENSUS/65% ......................susoslsspls.................splplhuYGh CONSENSUS/50% ......................susoslsGpVs.................AclsVhAYGh 5061.CADANGAP00000877_from_24_to_164QVLTKT------------LDPC--EMDLTG----------LCPM-NAGTIDVPKAVITV- CONSENSUS/80% phhppt............hs.C..t...tt..........hCPh...h.h.h..s...h. CONSENSUS/65% phhpps............hc.C..shthtt..........hCPl..sGphth..ush.l. CONSENSUS/50% slhscs............lDhC..slshpu..........LCPl.ssGslslp.ushpl. 5061.CADANGAP00000877_from_24_to_164-PESV--VKSIPNI-----------AYTVPDLDANVRIYINSTT--------TGEA-ITC CONSENSUS/80% .s.p...hptlPul...........uathPslsu.hpl.h.tt.........ttp..luC CONSENSUS/65% .stsh..sspIPuI...........AYslPDL-uhlclhlhspp........sspp.lAC CONSENSUS/50% .sssh..sspIPuI...........AYslPDLDApV+lpltsss........suss.lAC 5061.CADANGAP00000877_from_24_to_164VEASLSNGKTVY CONSENSUS/80% lpsthosshos. CONSENSUS/65% lpuploNG+osp CONSENSUS/50% VpAslSNGKTVp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |