TRF1_SALSA VKWCVKSEQELRKCHDLAAKVA--------EFSCVRKDGSFECIQAIKGGEADAITLDGG CONSENSUS/80% lpWCshup.EhpKCtphp....t........lpC.ptts..-ClttIhttcADAhsLDuG CONSENSUS/65% V+WCsluptEtpKCppaptt.tt.......tlpClptsos.-CIttIhpsEADAloLDGG CONSENSUS/50% V+WCAlScsEpsKCcsWssssps.......plsCVctsoscDCIpsItcsEADAloLDGG TRF1_SALSA DIYTAGLTNYGLQPIIAEDYG------------EDSDTCYYAVAVAKKGT--AFGFKTLR CONSENSUS/80% .la.Au.hsh.LhPlhuE.Ytpp...........ps.t.YhAVAVV++ss...hphppLp CONSENSUS/65% hlYpAG.tsh.LhPVhAE.Yssc..........ppspstYaAVAVVKKuo...hshspL+ CONSENSUS/50% hVYsAG.psstLpPVlAEsYsoc..........csPsosYYAVAVVKKuos.thsaNsL+ TRF1_SALSA GKKSCHTGLGKSAGWNIPIGTLVTESQIRWAGIEDRP----VESAVSDFFNASCAPGATM CONSENSUS/80% Gt+SCHTulsRoAGWsIPhGhLhp....t..tp.............t.F..tuCsPsup. CONSENSUS/65% GKKSCHTuluRoAGWNIPhGhLhp....phsspp............phF..tSCsPGup. CONSENSUS/50% GKKSCHTGlGRTAGWNIPlGLLhs....phssCchs.......tAsuaFFsuSCAPGAc. TRF1_SALSA G------------SKLCQLCKG-----------DCSRSHKEPYYDYAGAFQCLKDGAGDV CONSENSUS/80% ...............LCt.ChG............C.sssp-.Y.GYsGAh+CLh-.tGDV CONSENSUS/65% ...............LCpLChGs.........tcCsssspE.YaGYoGAF+CLh-stGDV CONSENSUS/50% sts...........pLCpLCtGs.........pKCssSscEsYYGYoGAFRCLsEsuGDV TRF1_SALSA AFIKPLAVPAAEKAS---------------YELLCKDG---TRASIDSYKTCHLARVPAH CONSENSUS/80% AFlKp.sV.pshstp...........p.ppacLLC.D....sRtslsphppCpLAtsPsH CONSENSUS/65% AFlKcsTV.cNhssps..........cpcpaELLChD....oRpsVscacsCaLApsPsH CONSENSUS/50% AFVKcoTVhENssGcs.t.WAtth..cp--YELLChDs..sTRKPVs-a+sCHLA+VPuH TRF1_SALSA AVVSR-KDPE--LANRIYNKLVA---------VKDFNLFSSDG---YAAKNLMFKDSAQK CONSENSUS/80% AVVsR..p...p.h..lhpttt..hu......sppFphFtS.t......KsLLFpDss.t CONSENSUS/65% AVVuR.pp.ttplh..Llpptt.pFGpph...sspFplFpSss......KsLLF+Dssts CONSENSUS/50% AVVuRs-c.cpcllppLLsQpp.cFG+ss...sscFpLFuSss......KDLLFKDSTps TRF1_SALSA LVQLPTTTDSFLYLGAEYMSTIRSLKK---SQATGASSRA----------- CONSENSUS/80% hhpl..ths.t.aLG.cYhpshpslppt...........t........... CONSENSUS/65% hhclstphs.p.YLG.cYhsulpsL+ps..........sp........... CONSENSUS/50% Ls+lPs+sctptYLGp-YloAlpsLRcss......s..su...........
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |