122586.NMB1140_from_350_to_422GILRTV-AA-SDTLAM------GGIH-KDVKKILQGKRVLPVLRPIWPLVAD----SGNR CONSENSUS/80% l.l+.t....utthh........ttt.+pl+chh.-.tlP...Rtphsllh......stp CONSENSUS/65% lplRhp.ps.G-pht......stttp.+clKcla.-tplP.h.RsphPllh......spp CONSENSUS/50% lslRhR.ps.G-+lph....hGpsus.+KLK+lap-t+lPsapRcclPLLh.....hscc 122586.NMB1140_from_350_to_422P-LAL----ANCCADFQ-----YSVSDGILPVH-----------PDF CONSENSUS/80% l.hhh.....shhhtt.............t..............l.h CONSENSUS/65% l.lhl....sGhhhspt..........tttth............lth CONSENSUS/50% l.lhl....sGltlspp.......hspsspsh............lpa
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |