HSE2EPI_1 RLVYKEVTTLTADPPDGIKVFPNEE-------------DLTDLQVT--IEGPEGTPYAGG CONSENSUS/80% tpl.tchtph..p...th.....t..............shh.h.hh..l.Gs.so.apss CONSENSUS/65% p+lhcEhpph.psss.shpsh.hsp.............slhpapsh..lhGPtsosYcsG CONSENSUS/50% pRLp+Elpslpcssssuhsutsssc.............sLtcWpss..IsGPscTPYEGG HSE2EPI_1 L----------FRMKLLLGKDFPASP-PKGYFLTK------------------------- CONSENSUS/80% h..........a.hpl.hs.pYPhpP.Pthtahs.......................... CONSENSUS/65% h..........aplplphPppYPhpP.PplpFhop......................... CONSENSUS/50% h..........FclslcFPscYPacP.PplcFhoc......................... HSE2EPI_1 ---------IFHPNVG-ANGEICVNVLK-------------RDWTAE-LGIRHVLLTI-K CONSENSUS/80% .........hhpPsl...sGplClsllp.............ppWps..hpl.pll.sl.. CONSENSUS/65% .........haHPNlp.tsGplCLslLp.............ppWsPs.hslpplLhul.. CONSENSUS/50% .........laHPNls.ssGslCLsILc.............-sWoPu.hslcslLlol.p HSE2EPI_1 CLLIH-PNPESALNEEAGRLLLE-----------NYEEYAARARLLTEIHGG CONSENSUS/80% shltp.sp.tps.t.phtt.h.p...........p...a.t.h...htt... CONSENSUS/65% ulLsp.PsspsPhsscsup.app...........sptpapppsp.hspphtt CONSENSUS/50% uLLs-.PNsssPhss-uAphapc...........sppcaccps+thscchsp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |