JC4916/1-139 FDQDVEKATSEMNTA--EDWGLILDICDKVGQS-RTGPKDCLR---------------SI CONSENSUS/80% ht.hl.psTst...t...shth.hphsD.lppp...ssp.uhp...............hl CONSENSUS/65% hpphlpcATspthhs..t-hshhl-lsDhlsps.tsss+puhc...............hl CONSENSUS/50% lsphl-+ATscslss..-DWuhhl-ICDhINss.sssP+-Al+...............sl JC4916/1-139 MRRVNH---KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS-EVSNVL-NKGHPK-- CONSENSUS/80% t++lpp...ts.p..hhsLplhphhVpNsGp.hh.plsppphhp..hhphh..p...... CONSENSUS/65% pKRlps...pssphthhALplL-shVcNCGpth+hplupcpFhs.pLhphltsc.t.p.. CONSENSUS/50% +KRlss...csscVslhALoLL-ssVKNCGppFHpElus+cFls.-Ll+llss+sssc.. JC4916/1-139 ---VCEKLKALMVEWTDEF----KNDPQLSLISAMIKNLKEQG CONSENSUS/80% ...lppthh.hlppW..sh....t.p.pht.h.thhp.hh.ts CONSENSUS/65% ...lpp+llphlppWtpsh....pspsphshlhshacplpppu CONSENSUS/50% ...V+c+lLsllppWspuF....+scschstltcsacpL+ccG
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |