CA1E_CHICK/1-18 KAD-LVFLVD--GSWSIG-------------------------------DDNFNKIISFL CONSENSUS/80% .hs.lhhllD...Stsh.................................t.ht.hhthh CONSENSUS/65% .hc.lhhllD..sStSht...............................tpphpthpphl CONSENSUS/50% ttD.lllllD..sSsShs...............................pspasps+shl CA1E_CHICK/1-18 YSTVGALDKI-------------------------GPDGTQVAIIQFSD----------- CONSENSUS/80% .thhpth...............................tsphslh.ast........... CONSENSUS/65% tpllpphph.............................psplulltaus........... CONSENSUS/50% ppllpplsht...........................pss+lullsFus........... CA1E_CHICK/1-18 -DPRTEFKLN-------------------------AYKTKETLLEAIQQIAY-------- CONSENSUS/80% .t.t..h.h.............................phtth.phltth.......... CONSENSUS/65% .psphhhsh...........................hpshpplhptlpphp......... CONSENSUS/50% .sspshhslp.........................ptpstssltpslpslph........ CA1E_CHICK/1-18 -----------------------------KGGNTKT-GKAIKHAREV------------- CONSENSUS/80% ..............................tt.s.h.stulthshp.............. CONSENSUS/65% .............................hsssoph.stulphshp.............. CONSENSUS/50% .............................suusTsh.usALptuhcp............. CA1E_CHICK/1-18 ------LFTGEAGMRKGI------------PKVLVVITDGRSQD---------------- CONSENSUS/80% ...........tt.t................thhllhosu..t................. CONSENSUS/65% ........ttttstpt...............phlllloDGpss................. CONSENSUS/50% ......hhptppuscstt............tclllllTDGpsss................ CA1E_CHICK/1-18 ---------------------------------DVNKVSREMQLDG----FSFFAIGVAD CONSENSUS/80% .................................t..t....htp.t....h.hhslshtt CONSENSUS/65% .................................phtpsstthppts....ltlhsluhsp CONSENSUS/50% ................................tcspcsspph+css....lplhslGlus CA1E_CHICK/1-18 A----------DYSELVNIGSKPSERHVFF--VDDFDAFTKIEDELITFVC CONSENSUS/80% .............t.ht.lst........................h.t... CONSENSUS/65% t..........shttlptlsststt.............h.p.htthhphhh CONSENSUS/50% s..........spspLcplusssssth........h.thssttpplssphp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |