ZAN_PIG/1-162 -YGCHPYGSA-----TCSVYGDP-HYLTFDGRRFNF--MGKCTYILAQP----------C CONSENSUS/80% ...h............C.h.tp..phhTFcsh.ath...stC.hlhspp........... CONSENSUS/65% .htshtttsts.....Csh.us..phpTFDuhtash...usChallsps..........s CONSENSUS/50% .hsCsspssss....hCslsGss.+hsTFDGtpYsa..sGsCpYlLup-..........C ZAN_PIG/1-162 GNLTEH-FFRVLVKK-EERGQEG------VSCLSKVYVTLPESTVTLLK----------- CONSENSUS/80% .tt....th.l.hpt......... .........tl.l...t..h........... . CONSENSUS/65% tpp....patlhhcp.tpptt... .....tphpplplhhts.plhhht....... . CONSENSUS/50% ssp....sFsVlscs.ssssst.. ....ssphpslplphsspslhhps....... . ZAN_PIG/1-162 ---GRHTLVGGQR---VTLPAIPSRG-------VFLAP-----SGRFVELQTAFGL--RV CONSENSUS/80% ......hhhs.......t.s.....h........h.h.........hhh...t.t....l CONSENSUS/65% ...tttlhhssp....hphshhptth.......tlphh.....stthhhh..sht...pl CONSENSUS/50% ...ssplplsspt...lslPhppsst.......slphp.....usshllspsshu..hpV ZAN_PIG/1-162 RWDGDQQ-----LFVSVPS------TFSGKLCGLCGDYDGDSSNDNQKPDG CONSENSUS/80% .ast.t......h.ltls........htsphpGlCGphssp.ts-hh..ps CONSENSUS/65% hassts......hplplss.......htspssGLCGshssptps-hhtsss CONSENSUS/50% paDGps......lplplss......papucTCGLCGsasu-spDDFpsPsG
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |