REP6_SCSVF/6-86 STSWVFTLNFEGE.....IPILPFNESVQYACWQHERV..GHDHLQGFIQFKSRNTTLRQ CONSENSUS/80% .hpahFTlN...............p-phpYhsht.Ets..Gp.HhQGalphKp+..pLht CONSENSUS/65% shsWsFTLN.ssp.....h..Lshp-plpYhVaQsEpuppGpcHlQGaVphKpR.ooLtQ CONSENSUS/50% ulCWCFTLNNPTE.....lslLsh+DElKYhVYQcERGssGT+HLQGYVEMK+R.TSL+Q REP6_SCSVF/6-86 AKYIFNGLNPHLEIAR.DVEKAQLYAMKE CONSENSUS/80% h+hhhss..sHhEht+.s.tpsp.YshKE CONSENSUS/65% hKthFsG..AHLEhtRGSppcARsYsMKE CONSENSUS/50% MKKlFPG.pAHLEIRRGSQEEARuYAMKE
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |