Consensus terms for the XPGN domain

RA27_YEAST/1-1   MGIKGLNAIISEHVPSAIRKSDIKSFFG--RKVAIDASMSLYQFLIAVRQQDGGQLTNEA
CONSENSUS/80%    MGlpsLh.hlt..t....p..thcth.s..cplAlDs.hhlaphhhsht.t.h..h.s..
CONSENSUS/65%    MGlpGLhplltphs....cplplcshpG..+plAlDushhLaphlhusppp.spsh.sp.
CONSENSUS/50%    MGIpGLhsllscsu....+plclEshpG..K+lAIDuuhaLYQFLpulcpppusslpssp


RA27_YEAST/1-1   GETTS----------------------------------HLMGMFYRTLRMIDNGIKPCY
CONSENSUS/80%    .......................................al.hhhhch.hhh..tlpPlh
CONSENSUS/65%    .......................................aL.hhhhRhtpLlphsI+Pla
CONSENSUS/50%    .......................................HLpshFpRsp+LlchsI+Pla


RA27_YEAST/1-1   VFDGKPP-------DLKSHELTKRSSRRVET
CONSENSUS/80%    VFDGts.........hKptp.tpR.tt+tpt
CONSENSUS/65%    VFDGpss........hKpppht+Rpp+Rtcs
CONSENSUS/50%    VFDGcsP.......sLKppsls+Rpc+Rpcu

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T