gi|2088527 PSCTAFGTFNSLGGHLIIPN-SGVSLLIPAGAIPQGRVYEMYVTVHRKENMRPPM--EDS CONSENSUS/80% ss.hs.hhhss.GGth.h.p.sGlplllP.tthstsh.hphhhhh.pp.s..P.h...tt CONSENSUS/65% suhhlthhhsupGGphphsc.oGlplllPstAhspspchphhlshpcc.ss.PPL..tcu CONSENSUS/50% suslVuuhlDupGGsLpus+.oGVRlIIPPcAlspsschshYLsls++lsshPPL..p-u gi|2088527 QTLLTPVVSCGP-------PGALLTRPVILTLHHCADPSTED-WKIQLKNQAVQG CONSENSUS/80% pslhS.ll.huP........sh.hhtPVhlph.Hhut...tp.h.h.lhpptstt CONSENSUS/65% EsLlS.llphGP.......sGshhhpPVlLplPHhAshpsp-.hplhlhpppsuu CONSENSUS/50% EoLLSPllssGP.......sGuhFL+PVILclPHCAshpsc-.pclslh+s-sGu
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |